SMTL ID : 6tkz.2 (1 other biounit)

Crystal structure of the DHR2 domain of DOCK10 in complex with CDC42

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

hetero-2-2-mer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 13 residues within 4Å: Chain B: D.11, G.12, A.13, V.14, G.15, K.16, T.17, C.18, Q.116, D.118, L.119, A.159, L.160 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:D.11, B:A.13, B:V.14, B:G.15, B:K.16, B:T.17, B:C.18, B:Q.116, B:A.159, B:L.160 Water bridges: B:K.16, B:K.16, B:Q.116 Salt bridges: B:K.16, B:D.118 GDP.2: 14 residues within 4Å: Chain C: D.11, G.12, A.13, V.14, G.15, K.16, T.17, C.18, Q.116, D.118, L.119, S.158, A.159, L.160 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:D.11, C:A.13, C:V.14, C:G.15, C:K.16, C:T.17, C:C.18, C:Q.116, C:Q.116, C:A.159, C:L.160 Salt bridges: C:K.16, C:D.118

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain D: R.6, W.9 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, D. et al., Structural basis for CDC42 and RAC activation by the dual specificity GEF DOCK10. Biorxiv (2022)

Release Date

2020-01-22

Peptides

Dedicator of cytokinesis protein 10: AD
Cell division control protein 42 homolog: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

D
A

B
C

C
D

Dedicator of cytokinesis protein 10

Cell division control protein 42 homolog

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