- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-6-6-6-mer
- Ligands
- 6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 30 x CA: CALCIUM ION(Non-covalent)
CA.3: 6 residues within 4Å:- Chain A: D.383, N.510, N.512, L.514, D.517, D.518
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:L.514, A:D.517, A:D.518
CA.4: 6 residues within 4Å:- Chain A: D.29, D.151, N.153, L.155, S.159, E.160
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.151, A:L.155, A:E.160, A:E.160
CA.7: 6 residues within 4Å:- Chain B: D.383, N.510, N.512, L.514, D.517, D.518
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:L.514, B:D.517, B:D.518
CA.8: 6 residues within 4Å:- Chain B: D.29, D.151, N.153, L.155, S.159, E.160
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.151, B:L.155, B:E.160, B:E.160
CA.11: 6 residues within 4Å:- Chain C: D.123, N.245, D.247, R.249, N.252, D.253
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.123, C:D.247, C:R.249, C:D.253
CA.12: 6 residues within 4Å:- Chain D: D.123, N.245, D.247, R.249, N.252, D.253
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:D.123, D:D.247, D:R.249, D:D.253
CA.13: 6 residues within 4Å:- Chain E: N.113, D.115, D.125, E.127, D.184, Y.185
5 PLIP interactions:5 interactions with chain E- Metal complexes: E:D.115, E:D.125, E:D.125, E:D.184, E:Y.185
CA.14: 6 residues within 4Å:- Chain E: D.115, H.116, S.119, G.120, D.122, G.124
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:D.115, E:H.116, E:S.119, E:D.122
CA.15: 6 residues within 4Å:- Chain F: N.113, D.115, D.125, E.127, D.184, Y.185
5 PLIP interactions:5 interactions with chain F- Metal complexes: F:D.115, F:D.125, F:D.125, F:D.184, F:Y.185
CA.16: 6 residues within 4Å:- Chain F: D.115, H.116, S.119, G.120, D.122, G.124
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:D.115, F:H.116, F:S.119, F:D.122
CA.19: 6 residues within 4Å:- Chain G: D.383, N.510, N.512, L.514, D.517, D.518
3 PLIP interactions:3 interactions with chain G- Metal complexes: G:L.514, G:D.517, G:D.518
CA.20: 6 residues within 4Å:- Chain G: D.29, D.151, N.153, L.155, S.159, E.160
4 PLIP interactions:4 interactions with chain G- Metal complexes: G:D.151, G:L.155, G:E.160, G:E.160
CA.23: 6 residues within 4Å:- Chain H: D.383, N.510, N.512, L.514, D.517, D.518
3 PLIP interactions:3 interactions with chain H- Metal complexes: H:L.514, H:D.517, H:D.518
CA.24: 6 residues within 4Å:- Chain H: D.29, D.151, N.153, L.155, S.159, E.160
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:D.151, H:L.155, H:E.160, H:E.160
CA.27: 6 residues within 4Å:- Chain I: D.123, N.245, D.247, R.249, N.252, D.253
4 PLIP interactions:4 interactions with chain I- Metal complexes: I:D.123, I:D.247, I:R.249, I:D.253
CA.28: 6 residues within 4Å:- Chain J: D.123, N.245, D.247, R.249, N.252, D.253
4 PLIP interactions:4 interactions with chain J- Metal complexes: J:D.123, J:D.247, J:R.249, J:D.253
CA.29: 6 residues within 4Å:- Chain K: N.113, D.115, D.125, E.127, D.184, Y.185
5 PLIP interactions:5 interactions with chain K- Metal complexes: K:D.115, K:D.125, K:D.125, K:D.184, K:Y.185
CA.30: 6 residues within 4Å:- Chain K: D.115, H.116, S.119, G.120, D.122, G.124
4 PLIP interactions:4 interactions with chain K- Metal complexes: K:D.115, K:H.116, K:S.119, K:D.122
CA.31: 6 residues within 4Å:- Chain L: N.113, D.115, D.125, E.127, D.184, Y.185
5 PLIP interactions:5 interactions with chain L- Metal complexes: L:D.115, L:D.125, L:D.125, L:D.184, L:Y.185
CA.32: 6 residues within 4Å:- Chain L: D.115, H.116, S.119, G.120, D.122, G.124
4 PLIP interactions:4 interactions with chain L- Metal complexes: L:D.115, L:H.116, L:S.119, L:D.122
CA.35: 6 residues within 4Å:- Chain M: D.383, N.510, N.512, L.514, D.517, D.518
3 PLIP interactions:3 interactions with chain M- Metal complexes: M:L.514, M:D.517, M:D.518
CA.36: 6 residues within 4Å:- Chain M: D.29, D.151, N.153, L.155, S.159, E.160
4 PLIP interactions:4 interactions with chain M- Metal complexes: M:D.151, M:L.155, M:E.160, M:E.160
CA.39: 6 residues within 4Å:- Chain N: D.383, N.510, N.512, L.514, D.517, D.518
3 PLIP interactions:3 interactions with chain N- Metal complexes: N:L.514, N:D.517, N:D.518
CA.40: 6 residues within 4Å:- Chain N: D.29, D.151, N.153, L.155, S.159, E.160
4 PLIP interactions:4 interactions with chain N- Metal complexes: N:D.151, N:L.155, N:E.160, N:E.160
CA.43: 6 residues within 4Å:- Chain O: D.123, N.245, D.247, R.249, N.252, D.253
4 PLIP interactions:4 interactions with chain O- Metal complexes: O:D.123, O:D.247, O:R.249, O:D.253
CA.44: 6 residues within 4Å:- Chain P: D.123, N.245, D.247, R.249, N.252, D.253
4 PLIP interactions:4 interactions with chain P- Metal complexes: P:D.123, P:D.247, P:R.249, P:D.253
CA.45: 6 residues within 4Å:- Chain Q: N.113, D.115, D.125, E.127, D.184, Y.185
5 PLIP interactions:5 interactions with chain Q- Metal complexes: Q:D.115, Q:D.125, Q:D.125, Q:D.184, Q:Y.185
CA.46: 6 residues within 4Å:- Chain Q: D.115, H.116, S.119, G.120, D.122, G.124
4 PLIP interactions:4 interactions with chain Q- Metal complexes: Q:D.115, Q:H.116, Q:S.119, Q:D.122
CA.47: 6 residues within 4Å:- Chain R: N.113, D.115, D.125, E.127, D.184, Y.185
5 PLIP interactions:5 interactions with chain R- Metal complexes: R:D.115, R:D.125, R:D.125, R:D.184, R:Y.185
CA.48: 6 residues within 4Å:- Chain R: D.115, H.116, S.119, G.120, D.122, G.124
4 PLIP interactions:4 interactions with chain R- Metal complexes: R:D.115, R:H.116, R:S.119, R:D.122
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.5: 3 residues within 4Å:- Chain A: R.142, N.143, N.153
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.142, A:N.143
NAG.6: 3 residues within 4Å:- Chain A: W.627, N.650, D.682
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.682, A:D.682
NAG.9: 3 residues within 4Å:- Chain B: R.142, N.143, N.153
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.142, B:N.143
NAG.10: 3 residues within 4Å:- Chain B: W.627, N.650, D.682
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.682, B:D.682
NAG.21: 3 residues within 4Å:- Chain G: R.142, N.143, N.153
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:R.142, G:N.143
NAG.22: 3 residues within 4Å:- Chain G: W.627, N.650, D.682
3 PLIP interactions:3 interactions with chain G- Hydrogen bonds: G:D.682, G:D.682, G:D.682
NAG.25: 3 residues within 4Å:- Chain H: R.142, N.143, N.153
2 PLIP interactions:2 interactions with chain H- Hydrogen bonds: H:R.142, H:N.143
NAG.26: 3 residues within 4Å:- Chain H: W.627, N.650, D.682
3 PLIP interactions:3 interactions with chain H- Hydrogen bonds: H:D.682, H:D.682, H:D.682
NAG.37: 3 residues within 4Å:- Chain M: R.142, N.143, N.153
2 PLIP interactions:2 interactions with chain M- Hydrogen bonds: M:R.142, M:N.143
NAG.38: 3 residues within 4Å:- Chain M: W.627, N.650, D.682
3 PLIP interactions:3 interactions with chain M- Hydrogen bonds: M:D.682, M:D.682, M:D.682
NAG.41: 3 residues within 4Å:- Chain N: R.142, N.143, N.153
2 PLIP interactions:2 interactions with chain N- Hydrogen bonds: N:R.142, N:N.143
NAG.42: 3 residues within 4Å:- Chain N: W.627, N.650, D.682
3 PLIP interactions:3 interactions with chain N- Hydrogen bonds: N:D.682, N:D.682, N:D.682
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Javitt, G. et al., Assembly Mechanism of Mucin and von Willebrand Factor Polymers. Cell (2020)
- Release Date
- 2020-10-21
- Peptides
- Mucin-2: ABGHMN
Mucin-2: CDIJOP
Mucin-2: EFKLQR - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BG
AH
BM
AN
BC
CD
DI
CJ
DO
CP
DE
EF
FK
EL
FQ
ER
F
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-6-6-6-mer
- Ligands
- 6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 30 x CA: CALCIUM ION(Non-covalent)
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Javitt, G. et al., Assembly Mechanism of Mucin and von Willebrand Factor Polymers. Cell (2020)
- Release Date
- 2020-10-21
- Peptides
- Mucin-2: ABGHMN
Mucin-2: CDIJOP
Mucin-2: EFKLQR - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BG
AH
BM
AN
BC
CD
DI
CJ
DO
CP
DE
EF
FK
EL
FQ
ER
F