SMTL ID : 6tmg.1

Cryo-EM structure of Toxoplasma gondii mitochondrial ATP synthase dimer, membrane region model

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer

Ligands

6 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)(Covalent)

PC1.1: 37 residues within 4Å: Chain E: L.32, Y.33, S.35, F.36, Y.37, S.39, Q.40, T.43, K.44, Y.45, M.47, V.48, F.49 Chain G: F.91, F.92, F.105 Chain L: L.14, V.18 Chain R: L.66 Chain S: A.61, Y.62 Chain W: M.88, L.91, T.95, R.96, A.97, F.98, P.99, F.100 Chain X: L.215, A.217, Y.218, M.219 Ligands: CDL.3, PEE.5, PEE.6, CDL.9 16 PLIP interactions: 8 interactions with chain E, 2 interactions with chain G, 1 interactions with chain L, 5 interactions with chain W Hydrophobic interactions: E:Y.33, E:F.36, E:F.36, E:V.48, G:F.91, G:F.105, L:L.14, W:L.91, W:R.96 Hydrogen bonds: E:S.39, E:Q.40, E:Q.40, E:T.43 Salt bridges: W:R.96, W:R.96 pi-Cation interactions: W:F.100 PC1.4: 26 residues within 4Å: Chain E: P.9, L.10, G.11, V.12, R.15, V.17, G.20, M.21, S.23, F.24, I.25 Chain H: W.45, F.54, L.57, F.58 Chain S: M.79, Y.82, L.83, I.86, F.87 Chain V: Q.242, P.243, S.247 Ligands: CDL.3, PEE.6, CDL.9 6 PLIP interactions: 2 interactions with chain H, 2 interactions with chain E, 2 interactions with chain S Hydrophobic interactions: H:F.58, H:F.58, S:Y.82, S:F.87 Hydrogen bonds: E:G.20 Salt bridges: E:R.15 PC1.14: 26 residues within 4Å: Chain F: P.167, F.171, F.205, F.206, C.209, Y.210, S.212, Y.213, L.216, T.217 Chain K: T.178, S.179 Chain M: W.269, T.274, F.277, F.281 Chain P: Y.73, Y.76, K.77, H.80 Chain S: F.271, T.272 Chain W: P.83, F.85 Ligands: CDL.13, CDL.20 11 PLIP interactions: 3 interactions with chain M, 2 interactions with chain S, 2 interactions with chain P, 3 interactions with chain F, 1 interactions with chain W Hydrogen bonds: M:W.269, M:T.274, M:T.274, P:Y.73 Hydrophobic interactions: S:F.271, S:F.271, F:F.205, F:F.206, F:Y.213, W:F.85 Salt bridges: P:K.77 PC1.22: 36 residues within 4Å: Chain 2: L.32, Y.33, S.35, F.36, Y.37, S.39, Q.40, T.43, K.44, M.47, V.48, F.49 Chain 4: F.91, F.92, F.105 Chain 9: L.14, V.18 Ligands: CDL.24, PEE.26, PEE.27, CDL.30 Chain f: L.66 Chain g: A.61, Y.62 Chain k: M.88, L.91, T.95, R.96, A.97, F.98, P.99, F.100 Chain l: L.215, A.217, Y.218, M.219 15 PLIP interactions: 7 interactions with chain 2, 1 interactions with chain 9, 5 interactions with chain k, 1 interactions with chain 4, 1 interactions with chain f Hydrophobic interactions: 2:L.32, 2:Y.33, 2:V.48, 9:L.14, k:L.91, k:P.99, 4:F.105, f:L.66 Hydrogen bonds: 2:S.39, 2:Q.40, 2:Q.40, 2:T.43 Salt bridges: k:R.96, k:R.96 pi-Cation interactions: k:F.100 PC1.25: 25 residues within 4Å: Chain 2: P.9, L.10, G.11, V.12, R.15, V.17, G.20, M.21, S.23, I.25 Chain 5: W.45, F.54, L.57, F.58 Ligands: CDL.24, PEE.27, CDL.30 Chain g: M.79, Y.82, L.83, I.86, F.87 Chain j: Q.242, P.243, S.247 9 PLIP interactions: 3 interactions with chain 2, 3 interactions with chain g, 3 interactions with chain 5 Hydrogen bonds: 2:G.20, 2:M.21 Salt bridges: 2:R.15 Hydrophobic interactions: g:Y.82, g:I.86, g:F.87, 5:F.58, 5:F.58, 5:F.58 PC1.37: 26 residues within 4Å: Chain 3: P.167, F.171, F.205, F.206, C.209, Y.210, S.212, Y.213, L.216, T.217 Chain 8: T.178, S.179 Ligands: CDL.36, CDL.43 Chain a: W.269, T.274, F.277, F.281 Chain d: Y.73, Y.76, K.77, H.80 Chain g: F.271, T.272 Chain k: P.83, F.85 9 PLIP interactions: 2 interactions with chain d, 2 interactions with chain 3, 3 interactions with chain a, 1 interactions with chain k, 1 interactions with chain g Hydrogen bonds: d:Y.73, a:W.269, a:T.274, a:T.274 Salt bridges: d:K.77 Hydrophobic interactions: 3:F.206, 3:Y.213, k:F.85, g:F.271

14 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.2: 13 residues within 4Å: Chain E: F.56, F.60, T.64, K.65, D.99, D.100, E.101 Chain L: A.26, A.29, W.30, N.34, R.55 Ligands: CDL.9 8 PLIP interactions: 6 interactions with chain E, 2 interactions with chain L Hydrophobic interactions: E:F.60, L:A.26 Hydrogen bonds: E:D.99, E:D.99, E:D.100, E:D.100, E:E.101, L:R.55 LMT.8: 19 residues within 4Å: Chain H: F.62, Q.65, G.66, T.69 Chain I: G.56, L.59, Y.60, M.63, R.64, F.68, T.70, E.71 Chain J: R.222, R.223, A.224, R.225 Ligands: CDL.7, LMT.11, LMT.17 7 PLIP interactions: 2 interactions with chain I, 4 interactions with chain J, 1 interactions with chain H Hydrophobic interactions: I:Y.60 Hydrogen bonds: I:E.71, J:R.222, J:R.223, J:R.225, H:Q.65 Salt bridges: J:R.222 LMT.11: 15 residues within 4Å: Chain H: Y.64, Q.65, K.68 Chain J: R.222, R.223 Chain L: N.28, A.29, R.31, E.32, L.33, G.35, P.52, S.53 Ligands: LMT.8, CDL.9 10 PLIP interactions: 3 interactions with chain H, 3 interactions with chain L, 4 interactions with chain J Hydrogen bonds: H:Q.65, H:K.68, L:N.28, J:R.222, J:R.222, J:R.223, J:R.223 Salt bridges: H:K.68 Hydrophobic interactions: L:N.28, L:E.32 LMT.15: 18 residues within 4Å: Chain G: P.114, P.115, P.116, K.117, L.120 Chain J: R.225 Chain R: F.140, V.141, F.145, Y.146, Q.147, R.148, R.149, P.150 Chain W: S.60, T.62 Ligands: CDL.7, LMT.17 6 PLIP interactions: 2 interactions with chain G, 4 interactions with chain R Hydrogen bonds: G:P.115, G:K.117, R:F.145, R:R.148 Hydrophobic interactions: R:Y.146, R:Y.146 LMT.17: 18 residues within 4Å: Chain H: L.55, F.58, T.59, P.61, F.62, Q.65 Chain J: R.225 Chain R: Y.146 Chain S: F.87, C.90, A.91, I.94 Ligands: PEE.6, CDL.7, LMT.8, CDL.9, LMT.15, CDL.18 4 PLIP interactions: 1 interactions with chain J, 2 interactions with chain H, 1 interactions with chain R Salt bridges: J:R.225 Hydrophobic interactions: H:L.55 Hydrogen bonds: H:F.58, R:Y.146 LMT.19: 14 residues within 4Å: Chain 4: G.205 Chain F: V.165, L.168, L.169, S.172, V.173, E.176 Chain S: L.269, N.274, L.276, S.277, G.278, N.291 Ligands: CDL.20 6 PLIP interactions: 3 interactions with chain S, 3 interactions with chain F Hydrophobic interactions: S:L.269, F:L.168, F:L.169 Hydrogen bonds: S:L.276, S:N.291, F:E.176 LMT.21: 14 residues within 4Å: Chain F: T.161, A.164 Chain G: R.122 Chain L: F.9 Chain S: D.259, H.260, Y.264 Chain T: M.117, N.120, A.121, Y.124, C.125 Ligands: PEE.5, CDL.20 5 PLIP interactions: 2 interactions with chain S, 1 interactions with chain F, 1 interactions with chain T, 1 interactions with chain G Hydrogen bonds: S:D.259, S:Y.264, G:R.122 Hydrophobic interactions: F:T.161, T:A.121 LMT.23: 14 residues within 4Å: Chain 2: F.56, F.60, T.64, K.65, D.99, D.100, E.101 Chain 9: A.26, A.29, W.30, L.33, N.34, R.55 Ligands: CDL.30 8 PLIP interactions: 6 interactions with chain 2, 2 interactions with chain 9 Hydrophobic interactions: 2:F.60, 9:A.26 Hydrogen bonds: 2:D.99, 2:D.99, 2:D.100, 2:D.100, 2:E.101, 9:R.55 LMT.29: 19 residues within 4Å: Chain 5: Q.65, G.66, T.69 Chain 6: G.56, L.59, Y.60, M.63, R.64, F.68, T.70, E.71 Chain 7: D.221, R.222, R.223, A.224, R.225 Ligands: CDL.28, LMT.32, LMT.40 6 PLIP interactions: 1 interactions with chain 6, 4 interactions with chain 7, 1 interactions with chain 5 Hydrogen bonds: 6:E.71, 7:R.222, 7:R.222, 7:R.225, 5:Q.65 Salt bridges: 7:R.222 LMT.32: 15 residues within 4Å: Chain 5: Y.64, Q.65, K.68 Chain 7: R.222, R.223 Chain 9: N.28, A.29, R.31, E.32, L.33, G.35, P.52, S.53 Ligands: LMT.29, CDL.30 9 PLIP interactions: 3 interactions with chain 5, 4 interactions with chain 7, 2 interactions with chain 9 Hydrogen bonds: 5:Q.65, 5:K.68, 7:R.222, 7:R.222, 7:R.223, 7:R.223, 9:N.28 Salt bridges: 5:K.68 Hydrophobic interactions: 9:N.28 LMT.38: 18 residues within 4Å: Chain 4: P.114, P.115, P.116, K.117, L.120 Chain 7: R.225 Ligands: CDL.28, LMT.40 Chain f: F.140, V.141, F.145, Y.146, Q.147, R.148, R.149, P.150 Chain k: S.60, T.62 6 PLIP interactions: 2 interactions with chain 4, 4 interactions with chain f Hydrogen bonds: 4:P.115, 4:K.117, f:F.145, f:R.148 Hydrophobic interactions: f:Y.146, f:Y.146 LMT.40: 18 residues within 4Å: Chain 5: L.55, F.58, T.59, P.61, F.62, Q.65 Chain 7: R.225 Ligands: PEE.27, CDL.28, LMT.29, CDL.30, LMT.38, CDL.41 Chain f: Y.146 Chain g: F.87, C.90, A.91, I.94 4 PLIP interactions: 1 interactions with chain 7, 2 interactions with chain 5, 1 interactions with chain f Salt bridges: 7:R.225 Hydrophobic interactions: 5:F.58 Hydrogen bonds: 5:F.58, f:Y.146 LMT.42: 14 residues within 4Å: Chain 3: V.165, L.168, L.169, S.172, V.173, E.176 Chain G: G.205 Ligands: CDL.43 Chain g: L.269, N.274, L.276, S.277, G.278, N.291 5 PLIP interactions: 2 interactions with chain g, 3 interactions with chain 3 Hydrophobic interactions: g:L.269, 3:L.168, 3:L.169 Hydrogen bonds: g:L.276, 3:E.176 LMT.44: 14 residues within 4Å: Chain 3: T.161, A.164 Chain 4: R.122 Chain 9: F.9 Ligands: PEE.26, CDL.43 Chain g: D.259, H.260, Y.264 Chain h: M.117, N.120, A.121, Y.124, C.125 5 PLIP interactions: 1 interactions with chain h, 2 interactions with chain g, 1 interactions with chain 3, 1 interactions with chain 4 Hydrophobic interactions: h:A.121, 3:T.161 Hydrogen bonds: g:D.259, g:Y.264, 4:R.122

18 x CDL: CARDIOLIPIN(Non-covalent)

CDL.3: 35 residues within 4Å: Chain E: M.21, F.24, R.28, R.31, L.32, S.35, V.48, P.52 Chain G: F.89, F.90, F.91, F.92, F.104 Chain L: P.22, W.25, A.26 Chain R: L.74, P.75 Chain S: Y.71, F.72, F.75, I.76, M.79, L.83 Chain V: V.245, Y.248 Chain W: L.91, T.92, T.95, R.96 Ligands: PC1.1, PC1.4, PEE.6, CDL.9, CDL.18 Ligand excluded by PLIP CDL.7: 23 residues within 4Å: Chain H: T.59, F.62, W.63 Chain I: A.53, G.56, Y.57, Y.60, R.61, R.64 Chain K: W.196 Chain R: F.140, Y.144, F.145, R.148 Chain S: V.101, V.105, F.123, F.126 Chain W: T.62 Ligands: LMT.8, LMT.15, PEE.16, LMT.17 Ligand excluded by PLIP CDL.9: 25 residues within 4Å: Chain E: F.24, R.28 Chain G: W.108, R.110 Chain H: F.58, S.60, P.61, Y.64, Q.65 Chain J: R.225, K.228, I.231 Chain L: L.21, I.24, W.25, N.28, A.29 Ligands: PC1.1, LMT.2, CDL.3, PC1.4, PEE.5, PEE.6, LMT.11, LMT.17 Ligand excluded by PLIP CDL.10: 40 residues within 4Å: Chain 3: S.187, G.188, L.189, F.192 Chain K: F.186, W.187, S.189, L.190 Chain M: L.251, C.252, L.254, G.255, V.256, F.258, G.259, L.260 Chain P: F.5, Y.8, I.9, A.12, I.16, V.36, Y.37, A.40, T.75, A.78, W.79, M.81, I.82, Y.83, R.86, K.90 Chain U: W.157, E.158, S.159, L.160, R.161 Ligands: CDL.13, PEE.16, CDL.33 Ligand excluded by PLIP CDL.12: 20 residues within 4Å: Chain 3: L.189, F.190, F.192, L.193, F.194, F.196, V.197 Chain M: N.244, L.245, V.246, S.247 Chain P: I.16, N.17, P.18, V.19, Q.20, W.21, T.22, R.23 Chain U: L.160 Ligand excluded by PLIP CDL.13: 38 residues within 4Å: Chain K: R.181, T.182, Y.183, L.184, P.185, F.186 Chain P: G.2, F.3, F.5, Y.8, A.15, W.43, T.44, Q.47, F.48, I.51, Y.76, W.79, Y.83, M.84, K.87 Chain T: S.137, M.140, F.141, G.144, L.145, Y.147, L.148 Chain W: S.66, F.70, L.71, P.72, P.74 Ligands: CDL.10, PC1.14, PEE.16, CDL.18, CDL.20 Ligand excluded by PLIP CDL.18: 42 residues within 4Å: Chain G: N.69, P.74, V.75, W.76, F.79, F.90, W.96, A.100, A.101, A.103, F.104, W.107 Chain R: F.123, Q.126, S.127, V.130, Y.131, V.134, A.135, A.138, S.139, H.142 Chain S: A.91, I.94, K.95 Chain T: F.139, M.140, L.143, G.144, A.146, Y.147, M.150 Chain W: I.68, F.69, F.70, L.71, K.73 Ligands: CDL.3, PEE.6, CDL.13, LMT.17, CDL.20 Ligand excluded by PLIP CDL.20: 33 residues within 4Å: Chain K: S.179, R.181 Chain P: F.48, L.72, Y.73, T.75, Y.76 Chain S: F.267, L.269, G.270, F.271, T.272, A.273 Chain T: Y.124, F.129, F.130, Y.134, S.137, I.138, F.141, Y.147, L.148, L.151 Chain W: L.71, L.78, I.80, L.82 Ligands: PEE.5, CDL.13, PC1.14, CDL.18, LMT.19, LMT.21 Ligand excluded by PLIP CDL.24: 35 residues within 4Å: Chain 2: M.21, F.24, R.28, R.31, L.32, S.35, V.48, P.52 Chain 4: F.89, F.90, F.91, F.92, F.104 Chain 9: P.22, W.25, A.26 Ligands: PC1.22, PC1.25, PEE.27, CDL.30, CDL.41 Chain f: L.74, P.75 Chain g: Y.71, F.72, F.75, I.76, M.79, L.83 Chain j: V.245, Y.248 Chain k: L.91, T.92, T.95, R.96 Ligand excluded by PLIP CDL.28: 23 residues within 4Å: Chain 5: T.59, F.62, W.63 Chain 6: A.53, G.56, Y.57, Y.60, R.61, R.64 Chain 8: W.196 Ligands: LMT.29, LMT.38, PEE.39, LMT.40 Chain f: F.140, Y.144, F.145, R.148 Chain g: V.101, V.105, F.123, F.126 Chain k: T.62 Ligand excluded by PLIP CDL.30: 25 residues within 4Å: Chain 2: F.24, R.28 Chain 4: W.108, R.110 Chain 5: F.58, S.60, P.61, Y.64, Q.65 Chain 7: R.225, K.228, I.231 Chain 9: L.21, I.24, W.25, N.28, A.29 Ligands: PC1.22, LMT.23, CDL.24, PC1.25, PEE.26, PEE.27, LMT.32, LMT.40 Ligand excluded by PLIP CDL.31: 40 residues within 4Å: Chain 8: F.186, W.187, S.189, L.190 Chain F: S.187, G.188, L.189, F.192 Ligands: CDL.35, CDL.36, PEE.39 Chain a: L.251, C.252, L.254, G.255, V.256, F.258, G.259, L.260 Chain d: F.5, Y.8, I.9, A.12, I.16, V.36, Y.37, A.40, T.75, A.78, W.79, M.81, I.82, Y.83, R.86, K.90 Chain i: W.157, E.158, S.159, L.160, R.161 Ligand excluded by PLIP CDL.33: 42 residues within 4Å: Chain M: R.101, L.245, S.248, Y.249, C.252, V.256, L.260, L.265 Chain P: H.4, F.5, Q.6, W.61, W.62, V.71, G.74, T.75, K.77, A.78, M.81 Ligands: CDL.10, CDL.35 Chain a: Y.97, K.99, L.265, F.270, T.274, F.275, G.278, A.279, Y.282, M.283 Chain d: W.61, W.62, Q.63, N.64, P.65, L.70, V.71, Y.73, G.74, K.77, M.81 Ligand excluded by PLIP CDL.34: 20 residues within 4Å: Chain F: L.189, F.190, F.192, L.193, F.194, F.196, V.197 Chain a: N.244, L.245, V.246, S.247 Chain d: I.16, N.17, P.18, V.19, Q.20, W.21, T.22, R.23 Chain i: L.160 Ligand excluded by PLIP CDL.35: 43 residues within 4Å: Chain M: Y.97, K.99, L.265, F.270, T.274, F.275, G.278, A.279, Y.282, M.283 Chain P: W.61, W.62, Q.63, N.64, P.65, L.70, V.71, Y.73, G.74, K.77, M.81 Ligands: CDL.31, CDL.33 Chain a: R.101, L.245, S.248, Y.249, C.252, V.256, L.260, L.265 Chain d: H.4, F.5, Q.6, I.9, W.61, W.62, V.71, G.74, T.75, K.77, A.78, M.81 Ligand excluded by PLIP CDL.36: 38 residues within 4Å: Chain 8: R.181, T.182, Y.183, L.184, P.185, F.186 Ligands: CDL.31, PC1.37, PEE.39, CDL.41, CDL.43 Chain d: G.2, F.3, F.5, Y.8, A.15, W.43, T.44, Q.47, F.48, I.51, Y.76, W.79, Y.83, M.84, K.87 Chain h: S.137, M.140, F.141, G.144, L.145, Y.147, L.148 Chain k: S.66, F.70, L.71, P.72, P.74 Ligand excluded by PLIP CDL.41: 42 residues within 4Å: Chain 4: N.69, P.74, V.75, W.76, F.79, F.90, W.96, A.100, A.101, A.103, F.104, W.107 Ligands: CDL.24, PEE.27, CDL.36, LMT.40, CDL.43 Chain f: F.123, Q.126, S.127, V.130, Y.131, V.134, A.135, A.138, S.139, H.142 Chain g: A.91, I.94, K.95 Chain h: F.139, M.140, L.143, G.144, A.146, Y.147, M.150 Chain k: I.68, F.69, F.70, L.71, K.73 Ligand excluded by PLIP CDL.43: 33 residues within 4Å: Chain 8: S.179, R.181 Ligands: PEE.26, CDL.36, PC1.37, CDL.41, LMT.42, LMT.44 Chain d: F.48, L.72, Y.73, T.75, Y.76 Chain g: F.267, L.269, G.270, F.271, T.272, A.273 Chain h: Y.124, F.129, F.130, Y.134, S.137, I.138, F.141, Y.147, L.148, L.151 Chain k: L.71, L.78, I.80, L.82 Ligand excluded by PLIP

6 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)

PEE.5: 37 residues within 4Å: Chain F: T.160, A.164, L.216, F.220 Chain G: F.102, F.105, I.106, W.108, S.109, R.110, V.111, F.112 Chain J: R.225, Y.230, I.231 Chain L: F.9, A.10, T.13, L.14, D.17, V.18, L.21 Chain T: L.122, F.130, I.138, F.141, A.142, L.145 Chain W: F.85, V.86, F.87, M.88 Ligands: PC1.1, PEE.6, CDL.9, CDL.20, LMT.21 16 PLIP interactions: 1 interactions with chain T, 6 interactions with chain G, 1 interactions with chain J, 3 interactions with chain F, 3 interactions with chain W, 2 interactions with chain L Hydrophobic interactions: T:F.141, G:F.102, G:F.105, F:T.160, F:A.164, F:F.220, W:F.85, W:F.87, W:F.87, L:F.9, L:T.13 Hydrogen bonds: G:W.108, G:S.109, G:R.110, J:R.225 Salt bridges: G:R.110 PEE.6: 28 residues within 4Å: Chain G: F.79, W.80, Q.83, F.89, F.90, F.91, F.104, F.105, W.107, W.108, S.109, R.110, D.113 Chain J: R.225 Chain L: V.18, L.21, W.25 Chain R: Y.146 Chain S: I.76, L.83, F.87 Ligands: PC1.1, CDL.3, PC1.4, PEE.5, CDL.9, LMT.17, CDL.18 16 PLIP interactions: 12 interactions with chain G, 1 interactions with chain J, 1 interactions with chain L, 2 interactions with chain S Hydrophobic interactions: G:W.80, G:Q.83, G:F.89, G:F.104, G:F.104, G:F.104, G:F.105, G:F.105, G:W.108, G:W.108, L:W.25, S:F.87, S:F.87 Hydrogen bonds: G:W.108, G:D.113 Salt bridges: J:R.225 PEE.16: 22 residues within 4Å: Chain I: Y.54, Y.57 Chain K: F.186, W.187, L.190, F.194, W.196 Chain R: F.140, Y.144, R.148 Chain S: F.120, F.123, A.124, F.126, I.127, A.128, H.130, M.131 Chain W: I.68 Ligands: CDL.7, CDL.10, CDL.13 5 PLIP interactions: 2 interactions with chain K, 1 interactions with chain R, 2 interactions with chain S Hydrophobic interactions: K:F.186, K:W.187, S:F.123 Salt bridges: R:R.148, S:H.130 PEE.26: 38 residues within 4Å: Chain 3: T.160, A.164, L.216, F.220 Chain 4: F.102, F.105, I.106, W.108, S.109, R.110, V.111, F.112 Chain 7: R.225, Y.230, I.231 Chain 9: L.7, F.9, A.10, T.13, L.14, D.17, V.18, L.21 Ligands: PC1.22, PEE.27, CDL.30, CDL.43, LMT.44 Chain h: L.122, F.130, I.138, F.141, A.142, L.145 Chain k: F.85, V.86, F.87, M.88 17 PLIP interactions: 2 interactions with chain 9, 3 interactions with chain k, 6 interactions with chain 4, 3 interactions with chain 3, 2 interactions with chain h, 1 interactions with chain 7 Hydrophobic interactions: 9:F.9, 9:T.13, k:F.85, k:F.87, k:F.87, 4:F.102, 4:F.105, 3:T.160, 3:A.164, 3:F.220, h:F.141, h:L.145 Hydrogen bonds: 4:W.108, 4:S.109, 4:R.110, 7:R.225 Salt bridges: 4:R.110 PEE.27: 28 residues within 4Å: Chain 4: F.79, W.80, Q.83, F.89, F.90, F.91, F.104, F.105, W.107, W.108, S.109, R.110, D.113 Chain 7: R.225 Chain 9: V.18, L.21, W.25 Ligands: PC1.22, CDL.24, PC1.25, PEE.26, CDL.30, LMT.40, CDL.41 Chain f: Y.146 Chain g: I.76, L.83, F.87 13 PLIP interactions: 2 interactions with chain g, 9 interactions with chain 4, 1 interactions with chain 7, 1 interactions with chain 9 Hydrophobic interactions: g:F.87, g:F.87, 4:W.80, 4:F.89, 4:F.104, 4:F.104, 4:F.105, 4:W.108, 4:W.108, 9:W.25 Hydrogen bonds: 4:W.108, 4:D.113 Salt bridges: 7:R.225 PEE.39: 22 residues within 4Å: Chain 6: Y.54, Y.57 Chain 8: F.186, W.187, L.190, F.194, W.196 Ligands: CDL.28, CDL.31, CDL.36 Chain f: F.140, Y.144, R.148 Chain g: F.120, F.123, A.124, F.126, I.127, A.128, H.130, M.131 Chain k: I.68 5 PLIP interactions: 2 interactions with chain 8, 2 interactions with chain g, 1 interactions with chain f Hydrophobic interactions: 8:F.186, 8:W.187, g:F.123 Salt bridges: g:H.130, f:R.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muhleip, A. et al., ATP synthase hexamer assemblies shape cristae of Toxoplasma mitochondria. Nat Commun (2021)

Release Date

2020-12-16

Peptides

ATPTG11: AY
ATPTG7: BZ
ATPTG14: C0
ATPTG5: D1
subunit k: E2
subunit a: F3
subunit i/j: G4
ATPTG13: H5
ATPTG15: I6
ATPTG6: J7
ATPTG3: K8
ATPTG17: L9
subunit b: Ma
ATPTG12: Nb
ATPTG10: Oc
subunit f: Pd
ATPTG8: Qe
ATPTG1: Rf
ATPTG2: Sg
subunit 8: Th
ATPTG9: Ui
ATPTG4: Vj
ATPTG16: Wk
subunit d: Xl

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
q

Y
Q

B
i

Z
I

C
t

0
T

D
g

1
G

E
o

2
O

F
k

3
K

G
j

4
J

H
s

5
S

I
u

6
U

J
h

7
H

K
e

8
E

L
x

9
X

M
b

a
B

N
r

b
R

O
p

c
P

P
v

d
V

Q
l

e
L

R
c

f
C

S
d

g
D

T
m

h
M

U
n

i
N

V
f

j
F

W
w

k
W

X
a

l
A

ATPTG11

ATPTG7

ATPTG14

ATPTG5

subunit k

subunit a

subunit i/j

ATPTG13

ATPTG15

ATPTG6

ATPTG3

ATPTG17

subunit b

ATPTG12

ATPTG10

subunit f

ATPTG8

ATPTG1

ATPTG2

subunit 8

ATPTG9

ATPTG4

ATPTG16

subunit d

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