- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x NA: SODIUM ION(Non-functional Binders)
- 8 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.2: 9 residues within 4Å:- Chain A: L.2, F.5, N.6, I.9, C.28, G.29, W.30, C.44
- Ligands: PG4.3
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.29
- Water bridges: A:N.6, A:W.30
PG4.3: 7 residues within 4Å:- Chain A: L.2, L.3, I.18, W.30
- Chain C: Y.105
- Chain D: W.61
- Ligands: PG4.2
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain D- Hydrophobic interactions: A:L.3, D:W.61
- Water bridges: A:N.6
PG4.4: 5 residues within 4Å:- Chain A: S.67, K.69, S.70, Y.72, T.74
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.70
- Water bridges: A:T.74
PG4.8: 9 residues within 4Å:- Chain B: L.2, F.5, N.6, I.9, C.28, G.29, W.30, C.44
- Ligands: PG4.9
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.29
- Water bridges: B:N.6, B:W.30, B:H.47
PG4.9: 7 residues within 4Å:- Chain B: L.2, L.3, I.18, W.30
- Chain C: W.61
- Chain D: Y.105
- Ligands: PG4.8
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: B:L.3, C:W.61
- Water bridges: B:N.6
PG4.10: 5 residues within 4Å:- Chain B: S.67, K.69, S.70, Y.72, T.74
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.70, B:Y.72, B:T.74
PG4.14: 13 residues within 4Å:- Chain C: F.5, N.6, I.9, I.18, Y.21, A.22, Y.27, C.28, G.29, C.44, H.47, D.48
- Ligands: NA.13
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.6, C:G.29, C:D.48
PG4.18: 13 residues within 4Å:- Chain D: F.5, N.6, I.9, I.18, Y.21, A.22, Y.27, C.28, G.29, C.44, H.47, D.48
- Ligands: NA.17
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:N.6, D:G.29, D:D.48
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.5: 4 residues within 4Å:- Chain A: R.65, Y.66
- Chain D: R.65, Y.66
Ligand excluded by PLIPCL.11: 4 residues within 4Å:- Chain B: R.65, Y.66
- Chain C: R.65, Y.66
Ligand excluded by PLIPCL.15: 5 residues within 4Å:- Chain B: H.1
- Chain C: H.1
- Chain D: I.18, P.19, F.23
Ligand excluded by PLIPCL.19: 5 residues within 4Å:- Chain A: H.1
- Chain C: I.18, P.19, F.23
- Chain D: H.1
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nemecz, D. et al., Crystal Structure of Isoform CBd of the Basic Phospholipase A 2 Subunit of Crotoxin: Description of the Structural Framework of CB for Interaction with Protein Targets. Molecules (2020)
- Release Date
- 2020-12-02
- Peptides
- Phospholipase A2 crotoxin basic subunit CBc: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
FC
DD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x NA: SODIUM ION(Non-functional Binders)
- 8 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nemecz, D. et al., Crystal Structure of Isoform CBd of the Basic Phospholipase A 2 Subunit of Crotoxin: Description of the Structural Framework of CB for Interaction with Protein Targets. Molecules (2020)
- Release Date
- 2020-12-02
- Peptides
- Phospholipase A2 crotoxin basic subunit CBc: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
FC
DD
D