SMTL ID : 6tor.1

human O-phosphoethanolamine phospho-lyase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: V.66, G.281, N.282, H.284 Chain B: M.74, N.78, H.284, V.315 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:G.281, A:H.284, B:N.78 Water bridges: A:C.62, A:N.282, B:N.78, B:H.284 GOL.2: 5 residues within 4Å: Chain A: Y.40, Q.48, L.50, R.396, F.424 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.48, A:R.396 GOL.3: 3 residues within 4Å: Chain A: F.259, E.328, Q.333 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.333 Water bridges: A:F.259, A:F.259, A:Q.263 GOL.5: 8 residues within 4Å: Chain A: M.74, N.78, H.284, V.315 Chain B: V.66, G.281, N.282, H.284 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:H.284, B:H.284, A:N.78 Water bridges: B:C.62, B:N.282 GOL.6: 5 residues within 4Å: Chain B: Y.40, Q.48, L.50, R.396, F.424 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.48, B:R.396 Water bridges: B:Y.40 GOL.7: 2 residues within 4Å: Chain B: E.328, Q.333 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.328 Water bridges: B:F.259, B:Q.333, B:Q.333

2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PMP.4: 12 residues within 4Å: Chain A: S.111, G.112, S.113, N.116, Y.139, H.140, H.142, E.213, D.246, V.248, Q.249, K.278 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:E.213, A:V.248 Hydrogen bonds: A:G.112, A:S.113, A:S.113, A:N.116, A:Q.249 Water bridges: A:Y.139, A:E.213 Salt bridges: A:H.142, A:K.278 PMP.8: 12 residues within 4Å: Chain B: S.111, G.112, S.113, N.116, Y.139, H.140, H.142, E.213, D.246, V.248, Q.249, K.278 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:E.213, B:V.248 Hydrogen bonds: B:G.112, B:S.113, B:N.116, B:Q.249 Water bridges: B:Y.139, B:Y.139, B:H.142, B:E.213 Salt bridges: B:H.142, B:K.278

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vettraino, C. et al., Structural characterization of human O-phosphoethanolamine phospho-lyase. Acta Crystallogr.,Sect.F (2020)

Release Date

2020-04-15

Peptides

Ethanolamine-phosphate phospho-lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ethanolamine-phosphate phospho-lyase