SMTL ID : 6tq2.2 (1 other biounit)

N-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 5-(4-(4-fluorophenyl)-1H-imidazol-5-yl)-1-methylpyridin-2(1H)-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.83, R.84, N.87, Y.89 Ligands: SO4.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.87 Water bridges: A:R.83 Salt bridges: A:R.83 SO4.2: 3 residues within 4Å: Chain A: R.83, N.87 Ligands: SO4.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.87 SO4.4: 5 residues within 4Å: Chain B: R.83, R.84, N.87, Y.89 Ligands: SO4.5 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.87 Water bridges: B:R.83 Salt bridges: B:R.83 SO4.5: 3 residues within 4Å: Chain B: R.83, N.87 Ligands: SO4.4 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.87

2 x NUQ: 5-[5-(4-fluorophenyl)-1~{H}-imidazol-4-yl]-1-methyl-pyridin-2-one(Non-covalent)

NUQ.3: 5 residues within 4Å: Chain A: W.52, P.53, V.58, L.63, N.111 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.63 Hydrogen bonds: A:N.111 Water bridges: A:Q.56 NUQ.6: 5 residues within 4Å: Chain B: W.52, P.53, V.58, L.63, N.111 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.63 Hydrogen bonds: B:N.111 Water bridges: B:Q.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wellaway, C.R. et al., Discovery of a Bromodomain and Extraterminal Inhibitor with a Low Predicted Human Dose through Synergistic Use of Encoded Library Technology and Fragment Screening. J.Med.Chem. (2020)

Release Date

2020-02-19

Peptides

Bromodomain-containing protein 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
CCC

B
CCC

Bromodomain-containing protein 2

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