SMTL ID : 6tqh.1

Escherichia coli AdhE structure in its extended conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 38 residues within 4Å: Chain A: D.487, F.489, L.490, Y.495, A.518, D.519, P.520, G.544, G.545, G.546, S.547, P.548, D.550, K.553, T.597, T.598, T.601, G.602, S.603, T.606, F.608, A.609, V.610, K.619, L.638, V.639, D.641, M.642, P.643, L.646, D.653, H.657, F.714, L.719, H.723, H.727, H.737 Ligands: FE.3 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:D.487, A:D.487, A:D.487, A:D.519, A:S.547, A:S.547, A:T.597, A:T.601, A:F.608, A:K.619, A:H.727 NAD.2: 31 residues within 4Å: Chain A: I.110, V.111, P.112, T.113, T.114, N.115, S.137, P.138, H.139, P.140, V.175, S.178, N.179, M.182, T.193, G.194, G.195, P.196, G.197, M.198, A.201, V.212, G.213, A.214, C.246, E.335, L.337, H.367, L.417, T.418, L.419 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:T.114, A:T.193 Hydrogen bonds: A:T.113, A:P.138, A:S.178, A:E.335, A:E.335, A:T.418, A:L.419, A:L.419 Salt bridges: A:H.139, A:H.139 NAD.4: 30 residues within 4Å: Chain D: I.110, V.111, P.112, T.113, T.114, N.115, S.137, P.138, H.139, P.140, V.175, S.178, M.182, T.193, G.194, G.195, G.197, M.198, A.201, V.212, G.213, A.214, C.246, A.247, E.335, L.337, H.367, L.417, T.418, L.419 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:P.112, D:T.193 Hydrogen bonds: D:V.111, D:T.113, D:T.114, D:S.178, D:G.197, D:E.335, D:T.418, D:L.419, D:L.419 Salt bridges: D:H.139, D:H.139 NAD.5: 34 residues within 4Å: Chain D: D.487, F.489, L.490, Y.495, A.518, D.519, P.520, G.544, G.545, G.546, S.547, P.548, D.550, T.597, T.598, T.601, S.603, T.606, F.608, V.610, K.619, L.638, V.639, M.642, P.643, L.646, D.653, H.657, F.714, L.719, H.723, H.727, H.737 Ligands: FE.6 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:D.519, D:S.547, D:T.597, D:T.598, D:S.603, D:K.619 pi-Stacking: D:H.737

2 x FE: FE (III) ION(Non-covalent)

FE.3: 6 residues within 4Å: Chain A: D.653, H.657, H.723, H.737, N.741 Ligands: NAD.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.653, A:D.653, A:H.657, A:H.723 FE.6: 6 residues within 4Å: Chain D: D.653, H.657, H.723, H.737, N.741 Ligands: NAD.5 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.653, D:D.653, D:H.657, D:H.723

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pony, P. et al., Filamentation of the bacterial bi-functional alcohol/aldehyde dehydrogenase AdhE is essential for substrate channeling and enzymatic regulation. Nat Commun (2020)

Release Date

2020-06-03

Peptides

Aldehyde-alcohol dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

C
C

D
B

Aldehyde-alcohol dehydrogenase

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