SMTL ID : 6tqj.1

Crystal structure of the c14 ring of the F1FO ATP synthase from spinach chloroplast

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-14-mer

Ligands

26 x LFA: EICOSANE(Non-covalent)(Non-functional Binders)

LFA.1: 4 residues within 4Å: Chain A: L.4, L.15 Ligands: LFA.2, LFA.27 Ligand excluded by PLIP LFA.2: 5 residues within 4Å: Chain A: L.4 Chain B: L.4, L.15 Ligands: LFA.1, LFA.5 Ligand excluded by PLIP LFA.3: 3 residues within 4Å: Chain C: F.59, Y.66 Ligands: LFA.4 Ligand excluded by PLIP LFA.4: 2 residues within 4Å: Chain C: Y.66 Ligands: LFA.3 Ligand excluded by PLIP LFA.5: 5 residues within 4Å: Chain B: L.4 Chain C: L.15 Chain D: I.11 Ligands: LFA.2, LFA.6 Ligand excluded by PLIP LFA.6: 3 residues within 4Å: Chain D: L.4 Ligands: LFA.5, LFA.7 Ligand excluded by PLIP LFA.7: 4 residues within 4Å: Chain E: L.4 Chain F: I.11 Ligands: LFA.6, LFA.8 Ligand excluded by PLIP LFA.8: 5 residues within 4Å: Chain F: A.8, L.15 Chain G: I.11 Ligands: LFA.7, LFA.11 Ligand excluded by PLIP LFA.9: 3 residues within 4Å: Chain G: A.58, I.65, Y.66 Ligand excluded by PLIP LFA.10: 3 residues within 4Å: Chain G: F.59, Y.66 Chain H: E.61 Ligand excluded by PLIP LFA.11: 5 residues within 4Å: Chain F: L.4 Chain G: I.11 Chain H: I.11 Ligands: LFA.8, LFA.15 Ligand excluded by PLIP LFA.12: 2 residues within 4Å: Chain H: L.55 Ligands: LFA.13 Ligand excluded by PLIP LFA.13: 4 residues within 4Å: Chain H: L.55 Chain I: R.50, L.55 Ligands: LFA.12 Ligand excluded by PLIP LFA.14: 1 residues within 4Å: Chain H: I.65 Ligand excluded by PLIP LFA.15: 6 residues within 4Å: Chain H: L.4, A.7, A.8 Chain I: I.11 Ligands: LFA.11, LFA.18 Ligand excluded by PLIP LFA.17: 5 residues within 4Å: Chain I: V.69, L.72, F.76 Chain J: F.76 Ligands: OLC.16 Ligand excluded by PLIP LFA.18: 4 residues within 4Å: Chain I: L.4 Chain J: I.11 Ligands: LFA.15, LFA.19 Ligand excluded by PLIP LFA.19: 7 residues within 4Å: Chain J: L.4, A.7, I.11, L.15 Chain K: I.11 Ligands: LFA.18, LFA.21 Ligand excluded by PLIP LFA.20: 4 residues within 4Å: Chain L: A.8 Chain M: I.11 Ligands: LFA.21, LFA.24 Ligand excluded by PLIP LFA.21: 5 residues within 4Å: Chain J: L.4 Chain K: A.8 Chain L: I.11 Ligands: LFA.19, LFA.20 Ligand excluded by PLIP LFA.22: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP LFA.23: 3 residues within 4Å: Chain M: A.62, I.65, Y.66 Ligand excluded by PLIP LFA.24: 7 residues within 4Å: Chain L: L.4 Chain M: L.4, A.8, I.11 Chain N: I.11 Ligands: LFA.20, LFA.27 Ligand excluded by PLIP LFA.25: 5 residues within 4Å: Chain A: L.72, F.76 Chain N: V.69, L.72 Ligands: LFA.26 Ligand excluded by PLIP LFA.26: 2 residues within 4Å: Chain N: F.76 Ligands: LFA.25 Ligand excluded by PLIP LFA.27: 7 residues within 4Å: Chain A: I.11 Chain M: L.4 Chain N: A.7, A.8, I.11 Ligands: LFA.1, LFA.24 Ligand excluded by PLIP

1 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.16: 5 residues within 4Å: Chain H: V.69, L.72, A.73, F.76 Ligands: LFA.17 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:V.69, H:A.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vlasov, A.V. et al., Unusual features of the c-ring of F1FOATP synthases. Sci Rep (2019)

Release Date

2019-12-25

Peptides

ATP synthase subunit c, chloroplastic: ABCDEFGHIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

Membrane

We predict this structure to be a membrane protein.
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ATP synthase subunit c, chloroplastic

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