SMTL ID : 6trg.1

Salmonella typhimurium neuraminidase mutant (D100S)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.00 Å

Oligo State

monomer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 12 residues within 4Å: Chain A: D.59, Q.60, R.94, M.96, S.97, W.118, K.123, T.124, W.125, L.172 Ligands: GOL.2, GOL.7 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.94, A:R.94, A:W.125 Water bridges: A:D.59, A:K.123, A:T.124, A:T.124, A:W.125, A:W.125 GOL.2: 9 residues within 4Å: Chain A: W.125, Q.191, L.202, G.226, S.227, E.228, R.243 Ligands: GOL.1, GOL.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.125 Water bridges: A:T.124, A:E.228, A:R.243 GOL.3: 5 residues within 4Å: Chain A: E.11, H.12, F.13, K.79, K.80 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:E.11, A:H.12, A:K.79, A:K.79 Water bridges: A:G.10, A:E.11, A:E.11, A:H.12, A:T.14, A:T.14 GOL.4: 5 residues within 4Å: Chain A: K.117, T.135, D.136, W.137, D.138 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.117, A:D.138, A:D.138 Water bridges: A:T.135 GOL.5: 7 residues within 4Å: Chain A: C.39, I.101, V.102, S.177, G.178, L.179, Q.180 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.102, A:Q.180 GOL.6: 8 residues within 4Å: Chain A: T.41, S.42, V.102, A.103, N.104, E.109, Q.180, R.345 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.104, A:E.109, A:E.109, A:R.345, A:R.345 GOL.7: 12 residues within 4Å: Chain A: R.34, I.35, R.53, D.59, M.96, S.97, L.172, E.228, Y.339 Ligands: GOL.1, GOL.2, PO4.8 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.53, A:R.53, A:D.59, A:D.59, A:S.97, A:S.97 Water bridges: A:D.59, A:E.228

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.8: 6 residues within 4Å: Chain A: R.34, R.243, Y.304, R.306, Y.339 Ligands: GOL.7 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.339, A:Y.339 Salt bridges: A:R.34, A:R.243, A:R.306 PO4.9: 1 residues within 4Å: Chain A: S.26 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.26, A:S.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garman, E.F. et al., Salmonella typhimurium neuraminidase mutant (D100S). To Be Published

Release Date

2020-01-22

Peptides

Sialidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
XXX

Sialidase

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