- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GAL- FUC- GLA: alpha-L-fucopyranose-(1-2)-[alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose
- 4 x GLA- FUC- GLA: alpha-L-fucopyranose-(1-2)-[alpha-D-galactopyranose-(1-3)]alpha-D-galactopyranose
GLA-FUC-GLA.2: 9 residues within 4Å:- Chain A: D.72, L.73, Y.74, N.75, W.87, Q.88, N.95, H.97, Q.98
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.95, A:Q.98
- Water bridges: A:W.87, A:Q.88, A:Q.98
GLA-FUC-GLA.3: 11 residues within 4Å:- Chain A: D.123, L.124, V.125, N.126, W.138, T.139, G.140, E.144, N.146, H.148, Q.149
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:T.139, A:E.144, A:N.146, A:Q.149
- Water bridges: A:W.138, A:T.139
GLA-FUC-GLA.14: 9 residues within 4Å:- Chain B: D.72, L.73, Y.74, N.75, W.87, Q.88, N.95, H.97, Q.98
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.95, B:Q.98
- Water bridges: B:W.87, B:Q.88, B:T.93, B:Q.98
GLA-FUC-GLA.15: 11 residues within 4Å:- Chain B: D.123, L.124, V.125, N.126, W.138, T.139, G.140, E.144, N.146, H.148, Q.149
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:E.144, B:N.146, B:Q.149
- Water bridges: B:W.138, B:T.139, B:T.139
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 5 residues within 4Å:- Chain A: S.206, Y.213
- Chain B: K.228, A.231, D.232
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:K.228
- Water bridges: A:K.207
EDO.5: 7 residues within 4Å:- Chain A: D.214, C.215, D.216, L.247, Y.289
- Chain B: L.182
- Ligands: MN.10
No protein-ligand interaction detected (PLIP)EDO.16: 5 residues within 4Å:- Chain A: K.228, A.231, D.232
- Chain B: S.206, Y.213
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:K.228
- Water bridges: A:D.232, A:D.232, B:K.207
EDO.17: 7 residues within 4Å:- Chain A: L.182
- Chain B: D.214, C.215, D.216, L.247, Y.289
- Ligands: MN.22
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Water bridges: A:L.182, A:D.183
- Hydrogen bonds: B:Y.289
- 2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.7: 2 residues within 4Å:- Chain A: I.53, V.56
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:I.53, A:V.56
- Water bridges: A:D.58
NA.8: 1 residues within 4Å:- Chain A: G.29
1 PLIP interactions:1 interactions with chain A- Water bridges: A:N.85
NA.19: 2 residues within 4Å:- Chain B: I.53, V.56
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:I.53, B:V.56
- Water bridges: B:D.58
NA.20: 1 residues within 4Å:- Chain B: G.29
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.29
- Water bridges: B:N.85
- 6 x MN: MANGANESE (II) ION(Non-covalent)
MN.9: 2 residues within 4Å:- Chain A: H.172, D.287
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.172, A:D.287, H2O.6, H2O.7
MN.10: 6 residues within 4Å:- Chain A: D.214, D.216
- Chain B: L.182, D.183
- Ligands: EDO.5, MN.12
5 PLIP interactions:2 interactions with chain A, 2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: A:D.214, A:D.216, B:L.182, B:D.183, H2O.7
MN.12: 7 residues within 4Å:- Chain A: Q.211, D.214, D.216, D.217
- Chain B: D.183
- Ligands: MN.10, CA.11
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Metal complexes: A:Q.211, A:D.214, A:D.216, A:D.217, B:D.183
MN.21: 2 residues within 4Å:- Chain B: H.172, D.287
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.172, B:D.287, H2O.15, H2O.16
MN.22: 6 residues within 4Å:- Chain A: L.182, D.183
- Chain B: D.214, D.216
- Ligands: EDO.17, MN.24
5 PLIP interactions:2 interactions with chain A, 2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: A:L.182, A:D.183, B:D.214, B:D.216, H2O.16
MN.24: 7 residues within 4Å:- Chain A: D.183
- Chain B: Q.211, D.214, D.216, D.217
- Ligands: MN.22, CA.23
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Metal complexes: B:Q.211, B:D.214, B:D.216, B:D.217, A:D.183
- 2 x CA: CALCIUM ION(Non-covalent)
CA.11: 6 residues within 4Å:- Chain A: Q.211, D.214, D.216, D.217
- Chain B: D.183
- Ligands: MN.12
5 PLIP interactions:3 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: A:Q.211, A:D.216, A:D.217, B:D.183, H2O.1
CA.23: 6 residues within 4Å:- Chain A: D.183
- Chain B: Q.211, D.214, D.216, D.217
- Ligands: MN.24
5 PLIP interactions:3 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: B:Q.211, B:D.216, B:D.217, A:D.183, H2O.10
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Manna, D. et al., Crystal structure of MOA in complex with a peptide fragment: A protease caught in flagranti . Curr Res Struct Biol (2020)
- Release Date
- 2020-07-29
- Peptides
- Agglutinin: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AAAB
AAA
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GAL- FUC- GLA: alpha-L-fucopyranose-(1-2)-[alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose
- 4 x GLA- FUC- GLA: alpha-L-fucopyranose-(1-2)-[alpha-D-galactopyranose-(1-3)]alpha-D-galactopyranose
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 6 x MN: MANGANESE (II) ION(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Manna, D. et al., Crystal structure of MOA in complex with a peptide fragment: A protease caught in flagranti . Curr Res Struct Biol (2020)
- Release Date
- 2020-07-29
- Peptides
- Agglutinin: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AAAB
AAA