SMTL ID : 6tt5.1

Crystal structure of DCLRE1C/Artemis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: P.199, V.202, N.251, T.252, R.278 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.199, A:R.278 EDO.2: 8 residues within 4Å: Chain A: Q.142, G.143, E.144, A.145, A.146, D.328, Y.332 Ligands: EDO.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.143, A:A.145, A:A.146 EDO.3: 8 residues within 4Å: Chain A: P.178, M.293, W.294, F.295, K.301, T.302, N.303, V.304 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.302, A:N.303 EDO.4: 10 residues within 4Å: Chain A: L.140, A.141, Q.142, G.143, E.144, A.145, E.325, D.328, F.329 Ligands: EDO.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.142, A:G.143, A:E.144, A:A.145, A:D.328 EDO.5: 4 residues within 4Å: Chain A: H.36, K.208, A.210, F.319 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.36, A:K.208, A:K.208 EDO.6: 1 residues within 4Å: Chain A: C.54 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.7: 4 residues within 4Å: Chain A: H.229, H.255, C.257, C.273 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.229, A:H.255, A:C.257, A:C.273 ZN.8: 3 residues within 4Å: Chain A: H.39, D.137 Ligands: NI.9 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.39, A:D.137, H2O.1, H2O.2

1 x NI: NICKEL (II) ION(Non-covalent)

NI.9: 5 residues within 4Å: Chain A: H.34, H.36, H.116, D.137 Ligands: ZN.8 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.34, A:H.36, A:H.116, A:D.137, H2O.1, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yosaatmadja, Y. et al., Structural and mechanistic insights into the Artemis endonuclease and strategies for its inhibition. Nucleic Acids Res. (2021)

Release Date

2020-02-12

Peptides

Protein artemis: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Protein artemis

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