SMTL ID : 6tta.1

Haddock model of NDM-1/quercetin complex

Coordinates

PDB Format

Method

SOLUTION NMR

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.82, C.166, H.208 Ligands: QUE.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.82, A:H.208 ZN.2: 7 residues within 4Å: Chain A: H.78, H.80, D.82, H.147, T.148, C.166 Ligands: QUE.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.78, A:H.80, A:H.147

1 x QUE: 3,5,7,3',4'-PENTAHYDROXYFLAVONE(Non-covalent)

QUE.3: 12 residues within 4Å: Chain A: M.25, F.28, V.31, W.51, H.80, D.82, H.147, C.166, N.178, H.208 Ligands: ZN.1, ZN.2 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Riviere, G. et al., NMR Characterization of the Influence of Zinc(II) Ions on the Structural and Dynamic Behavior of the New Delhi Metallo-beta-Lactamase-1 and on the Binding with Flavonols as Inhibitors. Acs Omega (2020)

Release Date

2021-01-13

Peptides

Metallo beta lactamase NDM-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Metallo beta lactamase NDM-1

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