SMTL ID : 6ttc.1

Haddock model of NDM-1/myricetin complex

Coordinates

PDB Format

Method

SOLUTION NMR

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.83, C.167, H.209 Ligands: MYC.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.83, A:H.209 ZN.2: 7 residues within 4Å: Chain A: H.79, H.81, D.83, K.84, H.148, C.167 Ligands: MYC.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.79, A:H.81, A:D.83

1 x MYC: 3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE(Non-covalent)

MYC.3: 13 residues within 4Å: Chain A: M.26, F.29, W.52, H.79, H.81, D.83, H.148, C.167, G.178, N.179, H.209 Ligands: ZN.1, ZN.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Riviere, G. et al., NMR Characterization of the Influence of Zinc(II) Ions on the Structural and Dynamic Behavior of the New Delhi Metallo-beta-Lactamase-1 and on the Binding with Flavonols as Inhibitors. Acs Omega (2020)

Release Date

2021-01-13

Peptides

Metallo beta lactamase NDM-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Metallo beta lactamase NDM-1