SMTL ID : 6ttx.1

Crystal structure of the human METTL3-METTL14 complex bound to Compound 5 (ASI_M3M_051)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NX8: (2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)-~{N}-(piperidin-4-ylmethyl)oxolane-2-carboxamide(Non-covalent)

NX8.1: 15 residues within 4Å: Chain A: C.376, D.377, I.378, R.379, D.395, P.396, P.397, L.409, S.511, K.513, F.534, R.536, G.548, N.549, Q.550 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:S.511 Hydrogen bonds: A:D.377, A:I.378, A:N.549, A:N.549, A:Q.550, A:Q.550 Water bridges: A:D.395, A:K.513, A:F.534 pi-Stacking: A:F.534, A:F.534

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: E.438 Chain B: R.245, R.249, R.254, R.255 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:R.245, B:R.249, B:R.255 Hydrogen bonds: B:R.255 Salt bridges: B:R.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bedi, R.K. et al., Small-Molecule Inhibitors of METTL3, the Major Human Epitranscriptomic Writer. Chemmedchem (2020)

Release Date

2020-03-04

Peptides

N6-adenosine-methyltransferase catalytic subunit: A
N6-adenosine-methyltransferase non-catalytic subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

N6-adenosine-methyltransferase catalytic subunit

N6-adenosine-methyltransferase non-catalytic subunit

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