SMTL ID : 6tuh.1 (3 other biounits)

PH domain of Bruton's tyrosine kinase bound to compound 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

2 x NXT: 4,5,6,7-tetrahydro-1-benzofuran-3-carboxylic acid(Covalent)

NXT.1: 7 residues within 4Å: Chain A: K.11, Q.14, K.25, R.27, Y.38, K.52 Ligands: NXT.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.11, A:Y.38 Salt bridges: A:K.11, A:K.25, A:R.27 NXT.2: 7 residues within 4Å: Chain A: K.11, S.13, Q.14, Q.15, K.16, K.25 Ligands: NXT.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.25 Hydrogen bonds: A:Q.14, A:Q.15 Salt bridges: A:K.11, A:K.25

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 1 residues within 4Å: Chain A: E.95 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.95, H2O.1

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain A: H.142, C.153, C.154, C.164 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.142, A:C.153, A:C.154, A:C.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brear, P. et al., Crystal Structure of 1-methylindoline-2,3-dione covalently bound to the PH domain of Bruton's tyrosine kinase mutant R28C. To Be Published

Release Date

2020-11-25

Peptides

Tyrosine-protein kinase BTK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase BTK

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