SMTL ID : 6tuk.1

Crystal structure of Fdr9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 40 residues within 4Å: Chain A: V.7, G.8, G.9, G.10, L.11, A.12, A.13, L.32, C.33, A.34, E.35, R.42, P.43, L.45, S.46, K.47, V.74, A.75, A.76, A.101, T.102, G.103, A.104, V.118, R.119, I.145, E.148, A.227, W.230, G.259, D.260, V.261, E.276, H.277, W.278, D.279, A.281, F.311, W.312, S.313 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:V.118 Hydrogen bonds: A:G.9, A:G.9, A:L.11, A:A.12, A:A.34, A:R.42, A:R.42, A:K.47, A:A.76, A:A.76, A:A.104, A:D.260, A:H.277, A:W.278, A:W.312, A:W.312 Water bridges: A:G.10, A:A.13, A:E.35, A:R.119, A:V.261, A:W.278, A:D.279, A:A.281 Salt bridges: A:R.42, A:R.119

3 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)

BU3.2: 11 residues within 4Å: Chain A: L.109, V.140, G.141, I.163, E.164, A.165, T.195, G.196, V.197, I.222 Ligands: BU3.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.165, A:V.197 Hydrogen bonds: A:A.165 BU3.3: 8 residues within 4Å: Chain A: L.32, R.71, V.74, T.88, D.90, G.91, E.92, L.93 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.93 Hydrogen bonds: A:R.71, A:D.90 BU3.4: 9 residues within 4Å: Chain A: G.141, A.142, S.143, E.164, A.165, A.172, G.221, I.222 Ligands: BU3.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.142

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: R.128, K.132, R.156 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.128, A:R.156 SO4.6: 1 residues within 4Å: Chain A: K.319 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.319 Salt bridges: A:K.319 SO4.7: 3 residues within 4Å: Chain A: R.3, L.93, S.94 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.94 Water bridges: A:E.92 Salt bridges: A:R.3 SO4.8: 2 residues within 4Å: Chain A: R.192, L.193 4 PLIP interactions: 4 interactions with chain A Water bridges: A:L.191, A:R.192, A:L.193, A:T.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rodriguez Buitrago, J.A. et al., Expression, purification and crystal structure determination of a ferredoxin reductase from the actinobacterium Thermobifida fusca. Acta Crystallogr.,Sect.F (2020)

Release Date

2020-11-18

Peptides

Putative oxidoreductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Putative oxidoreductase