- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.3: 4 residues within 4Å:- Chain A: G.327, K.329, D.383, Y.386
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.383
BME.4: 4 residues within 4Å:- Chain A: G.269, K.270, R.271, P.272
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.271
- Water bridges: A:G.269, A:R.271
BME.5: 6 residues within 4Å:- Chain A: V.187, D.188, K.191, K.218, E.384, Y.387
2 PLIP interactions:2 interactions with chain A- Water bridges: A:D.188, A:D.188
BME.13: 4 residues within 4Å:- Chain D: G.327, K.329, D.383, Y.386
No protein-ligand interaction detected (PLIP)BME.14: 4 residues within 4Å:- Chain D: G.269, K.270, R.271, P.272
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.271
- Water bridges: D:G.269, D:R.271
BME.15: 6 residues within 4Å:- Chain D: V.187, D.188, K.191, K.218, E.384, Y.387
2 PLIP interactions:2 interactions with chain D- Water bridges: D:D.188, D:D.188
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 8 residues within 4Å:- Chain A: I.227, S.228, P.229, I.230, I.415, P.425, I.426, N.427
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.228, A:I.230, A:I.426
- Water bridges: A:N.427
GOL.8: 9 residues within 4Å:- Chain A: S.193, K.262, L.263, T.264, K.300, Y.301, A.302, W.369, N.377
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.193, A:K.262, A:W.369
GOL.9: 3 residues within 4Å:- Chain A: D.367, N.368, W.369
4 PLIP interactions:4 interactions with chain A- Water bridges: A:D.367, A:D.367, A:D.367, A:D.367
GOL.10: 5 residues within 4Å:- Chain A: Y.60, I.118, G.121, V.122, I.148
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:I.118, A:G.121, A:V.122
GOL.17: 8 residues within 4Å:- Chain D: I.227, S.228, P.229, I.230, I.415, P.425, I.426, N.427
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:S.228, D:I.230, D:I.426
- Water bridges: D:N.427
GOL.18: 9 residues within 4Å:- Chain D: S.193, K.262, L.263, T.264, K.300, Y.301, A.302, W.369, N.377
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:S.193, D:K.262, D:T.264, D:W.369
GOL.19: 3 residues within 4Å:- Chain D: D.367, N.368, W.369
4 PLIP interactions:4 interactions with chain D- Water bridges: D:D.367, D:D.367, D:D.367, D:D.367
GOL.20: 5 residues within 4Å:- Chain D: Y.60, I.118, G.121, V.122, I.148
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:I.118, D:G.121, D:V.122
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Golovinas, E. et al., Crystal structure of Archaeoglobus fulgidusArgonaute protein with cognate DNA oligoduplex 5'-pATTGTACGTACAAT. To be published
- Release Date
- 2021-01-27
- Peptides
- Piwi protein AF_1318: AD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Golovinas, E. et al., Crystal structure of Archaeoglobus fulgidusArgonaute protein with cognate DNA oligoduplex 5'-pATTGTACGTACAAT. To be published
- Release Date
- 2021-01-27
- Peptides
- Piwi protein AF_1318: AD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
A