SMTL ID : 6tvc.1

Crystal structure of the haemagglutinin from a transmissible H10N7 seal influenza virus isolated in Netherland

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.29 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.29 Water bridges: A:T.312 NAG.2: 3 residues within 4Å: Chain E: N.29, T.312 Chain F: L.52 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:N.29 Water bridges: E:N.29, E:T.312 NAG.3: 4 residues within 4Å: Chain F: S.147, E.150, S.151, N.154 5 PLIP interactions: 5 interactions with chain F Hydrophobic interactions: F:E.150 Hydrogen bonds: F:E.150, F:E.150, F:N.154, F:T.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Herfst, S. et al., Hemagglutinin Traits Determine Transmission of Avian A/H10N7 Influenza Virus between Mammals. Cell Host Microbe (2020)

Release Date

2020-10-21

Peptides

Haemagglutinin HA1: ACE
Haemagglutinin HA2: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Haemagglutinin HA1

Haemagglutinin HA2

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