SMTL ID : 6tvi.1

Salmonella typhimurium mutant neuraminidase (D100S)+ DANA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.00 Å

Oligo State

monomer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: T.41, S.42, V.102, A.103, N.104, E.109, R.345 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.109, A:R.345, A:R.345 Water bridges: A:E.109, A:E.109 GOL.2: 8 residues within 4Å: Chain A: D.86, K.117, N.119, T.135, D.136, W.137, D.138, H.159 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.117, A:D.138, A:D.138 Water bridges: A:N.119 GOL.3: 8 residues within 4Å: Chain A: C.39, C.100, I.101, V.102, S.177, G.178, L.179, Q.180 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.102, A:G.178, A:Q.180, A:Q.180 GOL.4: 9 residues within 4Å: Chain A: R.34, R.53, D.59, Y.304, R.306, A.334, S.335, G.336 Ligands: DAN.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.34, A:D.59 GOL.5: 5 residues within 4Å: Chain A: E.11, H.12, F.13, K.79, K.80 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.11, A:E.11, A:H.12, A:K.79, A:K.79 Water bridges: A:E.11, A:T.14 GOL.6: 5 residues within 4Å: Chain A: S.42, R.345, K.346, N.347, V.348 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.347, A:V.348

1 x DAN: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID(Non-covalent)

DAN.7: 18 residues within 4Å: Chain A: R.34, I.35, R.53, D.59, Q.60, M.96, S.97, W.118, T.124, W.125, G.126, L.172, E.228, R.243, Y.304, R.306, Y.339 Ligands: GOL.4 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:I.35, A:L.172 Hydrogen bonds: A:R.53, A:D.59, A:D.59, A:S.97, A:S.97, A:T.124, A:W.125, A:E.228, A:R.243, A:Y.339 Water bridges: A:D.59, A:Q.60, A:W.125, A:Q.191, A:E.228, A:E.228, A:R.243, A:R.243 Salt bridges: A:R.34, A:R.243, A:R.306

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garman, E.F. et al., Salmonella typhimurium mutant neuraminidase (D100S)+ DANA. To Be Published

Release Date

2020-02-12

Peptides

Sialidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Sialidase

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