- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 2 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose(Non-covalent)
- 1 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-GAL-SIA.2: 16 residues within 4Å:- Chain C: Y.90, G.127, T.128, T.129, K.130, N.138, W.146, H.178, S.181, E.185, L.189, Q.217, G.220, L.221, S.222, G.223
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:K.130, C:E.185, C:E.185, C:T.128, C:K.130, C:N.138, C:H.178, C:S.181, C:Q.217, C:S.222, C:S.222
- Hydrophobic interactions: C:W.146
- Water bridges: C:T.128, C:T.128, C:S.181, C:E.185, C:E.185, C:S.222, C:G.223
- 13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 6 residues within 4Å:- Chain A: I.262, Q.263, W.278, R.279, R.295
- Chain B: E.69
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:E.69, A:Q.263, A:Q.263
- Water bridges: B:S.65, A:R.279
EDO.5: 4 residues within 4Å:- Chain A: T.296, K.302
- Chain B: F.63
- Chain D: W.83
5 PLIP interactions:1 interactions with chain D, 4 interactions with chain A- Hydrogen bonds: D:W.83, A:T.296, A:K.302, A:K.302
- Water bridges: A:Y.303
EDO.6: 5 residues within 4Å:- Chain A: P.288, K.302
- Chain B: K.57, K.58
- Chain D: Y.94
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:P.288, A:K.302
- Water bridges: B:T.59
EDO.8: 6 residues within 4Å:- Chain B: W.83, S.87
- Chain E: K.302
- Chain F: F.63, I.88
- Ligands: EDO.18
5 PLIP interactions:2 interactions with chain E, 1 interactions with chain B, 2 interactions with chain F- Water bridges: E:Y.303, E:Y.303, F:T.89, F:T.89
- Hydrogen bonds: B:S.87
EDO.9: 5 residues within 4Å:- Chain A: T.313
- Chain B: W.21, I.48, T.49, L.52
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.313
EDO.10: 8 residues within 4Å:- Chain C: L.62, L.172, I.173, M.174, P.249, R.251, V.252, S.253
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:M.174, C:M.174, C:S.253, C:S.253
EDO.12: 5 residues within 4Å:- Chain C: T.296, K.302
- Chain D: F.63
- Chain F: W.83
- Ligands: EDO.14
7 PLIP interactions:5 interactions with chain C, 2 interactions with chain F- Hydrogen bonds: C:K.302, C:K.302
- Water bridges: C:T.296, C:T.296, C:T.296, F:W.83, F:W.83
EDO.13: 6 residues within 4Å:- Chain C: I.262, Q.263, W.278, R.279, R.295
- Chain D: E.69
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:Q.263, C:Q.263, D:E.69
- Water bridges: C:R.279, D:S.65
EDO.14: 7 residues within 4Å:- Chain C: Q.299, C.300, K.302
- Chain D: T.59, T.61, F.63
- Ligands: EDO.12
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:C.300, C:K.302, D:T.61, D:T.61
- Water bridges: C:K.302, D:T.59
EDO.16: 7 residues within 4Å:- Chain E: I.262, Q.263, W.278, R.279, R.295
- Chain F: S.65, E.69
5 PLIP interactions:3 interactions with chain F, 2 interactions with chain E- Water bridges: F:S.65, F:S.65, F:S.65
- Hydrogen bonds: E:Q.263, E:Q.263
EDO.17: 8 residues within 4Å:- Chain E: L.62, L.172, I.173, M.174, P.249, R.251, V.252, S.253
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:M.174, E:M.174, E:S.253, E:S.253
EDO.18: 5 residues within 4Å:- Chain B: W.83
- Chain E: T.296, K.302
- Chain F: F.63
- Ligands: EDO.8
7 PLIP interactions:6 interactions with chain E, 1 interactions with chain B- Hydrogen bonds: E:T.296, E:T.296, E:K.302, E:K.302
- Water bridges: E:T.296, E:Y.303, B:W.83
EDO.21: 6 residues within 4Å:- Chain E: D.3
- Chain F: N.28, A.29, A.143, C.144, D.145
4 PLIP interactions:1 interactions with chain E, 3 interactions with chain F- Hydrogen bonds: E:D.3, F:A.29
- Water bridges: F:Q.30, F:D.145
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.7: 6 residues within 4Å:- Chain B: H.75, G.78, N.79, N.82
- Chain E: E.106
- Ligands: CA.19
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain E- Hydrogen bonds: B:N.82
- Water bridges: E:R.258
NAG.11: 3 residues within 4Å:- Chain C: N.30, T.313
- Chain D: L.52
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.30
NAG.15: 4 residues within 4Å:- Chain D: H.75, G.78, N.79, N.82
1 PLIP interactions:1 interactions with chain D- Water bridges: D:N.82
NAG.20: 4 residues within 4Å:- Chain F: H.75, G.78, N.79, N.82
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain F- Water bridges: C:R.258, F:N.82
- 1 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Herfst, S. et al., Hemagglutinin Traits Determine Transmission of Avian A/H10N7 Influenza Virus between Mammals. Cell Host Microbe (2020)
- Release Date
- 2020-10-21
- Peptides
- Hemagglutinin HA1: ACE
Hemagglutinin HA2: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CC
EE
KB
DD
FF
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 2 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose(Non-covalent)
- 1 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Herfst, S. et al., Hemagglutinin Traits Determine Transmission of Avian A/H10N7 Influenza Virus between Mammals. Cell Host Microbe (2020)
- Release Date
- 2020-10-21
- Peptides
- Hemagglutinin HA1: ACE
Hemagglutinin HA2: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CC
EE
KB
DD
FF
L