SMTL ID : 6tvz.1

Structure of a psychrophilic CCA-adding enzyme crystallized in the XtalController device

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: R.311, K.315, K.332, Y.333, T.334, Q.337 Ligands: GOL.3, GOL.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.334, A:Q.337, A:Q.337, A:Q.337 Salt bridges: A:R.311, A:K.315 PO4.2: 4 residues within 4Å: Chain A: E.125, D.193, R.196, R.199 4 PLIP interactions: 4 interactions with chain A Water bridges: A:D.151, A:R.196 Salt bridges: A:R.196, A:R.199

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: K.315, E.318, K.332, Y.333 Ligands: PO4.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.311, A:E.318 GOL.4: 8 residues within 4Å: Chain A: Y.331, K.332, Y.333, T.334, K.355, Q.361, S.362 Ligands: PO4.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.333, A:K.355 Water bridges: A:Q.361 GOL.5: 3 residues within 4Å: Chain A: R.69, R.202, F.203 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.69, A:R.69, A:N.155, A:R.202, A:R.202 Water bridges: A:G.66

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 2 residues within 4Å: Chain A: R.311, K.315 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.311, A:K.315 ACT.7: 2 residues within 4Å: Chain A: Y.398, I.400 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.398

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Wijn, R. et al., Monitoring the Production of High Diffraction-Quality Crystals of Two Enzymes in Real Time Using In Situ Dynamic Light Scattering. Crystals (2020)

Release Date

2020-12-16

Peptides

CCA-adding enzyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CCA-adding enzyme

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