- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-24-mer
- Ligands
- 72 x SO4: SULFATE ION(Non-functional Binders)
- 39 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 2 residues within 4Å:- Chain A: R.18, F.98
Ligand excluded by PLIPGOL.3: 5 residues within 4Å:- Chain A: K.39, G.40, H.43, G.161
- Ligands: SO4.7
Ligand excluded by PLIPGOL.10: 6 residues within 4Å:- Chain B: E.97, T.100, Y.104, E.133
- Chain J: V.3, R.66
Ligand excluded by PLIPGOL.11: 2 residues within 4Å:- Chain B: R.18, F.98
Ligand excluded by PLIPGOL.13: 2 residues within 4Å:- Chain C: R.18, F.98
Ligand excluded by PLIPGOL.14: 7 residues within 4Å:- Chain C: E.97, T.100, Q.101, Y.104, E.133
- Chain G: V.3, R.66
Ligand excluded by PLIPGOL.19: 2 residues within 4Å:- Chain D: R.18, F.98
Ligand excluded by PLIPGOL.20: 6 residues within 4Å:- Chain A: V.3, R.66
- Chain D: E.97, T.100, Q.101, E.133
Ligand excluded by PLIPGOL.24: 2 residues within 4Å:- Chain E: R.18, F.98
Ligand excluded by PLIPGOL.28: 2 residues within 4Å:- Chain F: R.18, F.98
Ligand excluded by PLIPGOL.31: 4 residues within 4Å:- Chain G: G.84, I.85, K.86, D.87
Ligand excluded by PLIPGOL.32: 2 residues within 4Å:- Chain G: R.18, F.98
Ligand excluded by PLIPGOL.38: 3 residues within 4Å:- Chain H: S.5, E.6, K.7
Ligand excluded by PLIPGOL.43: 2 residues within 4Å:- Chain I: R.18, F.98
Ligand excluded by PLIPGOL.44: 5 residues within 4Å:- Chain I: K.39, G.40, H.43, G.161
- Ligands: SO4.48
Ligand excluded by PLIPGOL.51: 6 residues within 4Å:- Chain J: E.97, T.100, Y.104, E.133
- Chain R: V.3, R.66
Ligand excluded by PLIPGOL.52: 2 residues within 4Å:- Chain J: R.18, F.98
Ligand excluded by PLIPGOL.54: 2 residues within 4Å:- Chain K: R.18, F.98
Ligand excluded by PLIPGOL.55: 7 residues within 4Å:- Chain K: E.97, T.100, Q.101, Y.104, E.133
- Chain O: V.3, R.66
Ligand excluded by PLIPGOL.60: 2 residues within 4Å:- Chain L: R.18, F.98
Ligand excluded by PLIPGOL.61: 6 residues within 4Å:- Chain I: V.3, R.66
- Chain L: E.97, T.100, Q.101, E.133
Ligand excluded by PLIPGOL.65: 2 residues within 4Å:- Chain M: R.18, F.98
Ligand excluded by PLIPGOL.69: 2 residues within 4Å:- Chain N: R.18, F.98
Ligand excluded by PLIPGOL.72: 4 residues within 4Å:- Chain O: G.84, I.85, K.86, D.87
Ligand excluded by PLIPGOL.73: 2 residues within 4Å:- Chain O: R.18, F.98
Ligand excluded by PLIPGOL.79: 3 residues within 4Å:- Chain P: S.5, E.6, K.7
Ligand excluded by PLIPGOL.84: 2 residues within 4Å:- Chain Q: R.18, F.98
Ligand excluded by PLIPGOL.85: 5 residues within 4Å:- Chain Q: K.39, G.40, H.43, G.161
- Ligands: SO4.89
Ligand excluded by PLIPGOL.92: 6 residues within 4Å:- Chain B: V.3, R.66
- Chain R: E.97, T.100, Y.104, E.133
Ligand excluded by PLIPGOL.93: 2 residues within 4Å:- Chain R: R.18, F.98
Ligand excluded by PLIPGOL.95: 2 residues within 4Å:- Chain S: R.18, F.98
Ligand excluded by PLIPGOL.96: 7 residues within 4Å:- Chain S: E.97, T.100, Q.101, Y.104, E.133
- Chain W: V.3, R.66
Ligand excluded by PLIPGOL.101: 2 residues within 4Å:- Chain T: R.18, F.98
Ligand excluded by PLIPGOL.102: 6 residues within 4Å:- Chain Q: V.3, R.66
- Chain T: E.97, T.100, Q.101, E.133
Ligand excluded by PLIPGOL.106: 2 residues within 4Å:- Chain U: R.18, F.98
Ligand excluded by PLIPGOL.110: 2 residues within 4Å:- Chain V: R.18, F.98
Ligand excluded by PLIPGOL.113: 4 residues within 4Å:- Chain W: G.84, I.85, K.86, D.87
Ligand excluded by PLIPGOL.114: 2 residues within 4Å:- Chain W: R.18, F.98
Ligand excluded by PLIPGOL.120: 3 residues within 4Å:- Chain X: S.5, E.6, K.7
Ligand excluded by PLIP- 12 x LFA: EICOSANE(Non-covalent)
LFA.4: 13 residues within 4Å:- Chain A: S.23, Y.24, L.27, K.46, A.49, Q.50, L.53, M.57
- Chain B: I.20, S.23, L.27, K.46, Q.50
9 PLIP interactions:5 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:Y.24, A:L.27, A:A.49, A:Q.50, A:L.53, B:I.20, B:L.27, B:K.46, B:Q.50
LFA.15: 11 residues within 4Å:- Chain C: I.20, S.23, Y.24, L.27, Q.50, M.57
- Chain D: S.23, Y.24, L.27, Q.50, M.57
4 PLIP interactions:1 interactions with chain D, 3 interactions with chain C- Hydrophobic interactions: D:L.27, C:I.20, C:Y.24, C:L.27
LFA.25: 14 residues within 4Å:- Chain E: I.20, S.23, Y.24, L.27, K.46, Q.50, M.57
- Chain F: I.20, S.23, Y.24, L.27, Q.50, L.53, M.57
9 PLIP interactions:5 interactions with chain E, 4 interactions with chain F- Hydrophobic interactions: E:I.20, E:Y.24, E:L.27, E:K.46, E:Q.50, F:I.20, F:Y.24, F:L.27, F:L.53
LFA.33: 15 residues within 4Å:- Chain G: S.23, Y.24, L.27, K.46, Q.50, L.53, M.57
- Chain H: I.20, S.23, Y.24, L.27, K.46, Q.50, L.53, M.57
10 PLIP interactions:7 interactions with chain H, 3 interactions with chain G- Hydrophobic interactions: H:I.20, H:Y.24, H:L.27, H:K.46, H:Q.50, H:L.53, H:L.53, G:Y.24, G:L.27, G:Q.50
LFA.45: 13 residues within 4Å:- Chain I: S.23, Y.24, L.27, K.46, A.49, Q.50, L.53, M.57
- Chain J: I.20, S.23, L.27, K.46, Q.50
9 PLIP interactions:4 interactions with chain J, 5 interactions with chain I- Hydrophobic interactions: J:I.20, J:L.27, J:K.46, J:Q.50, I:Y.24, I:L.27, I:A.49, I:Q.50, I:L.53
LFA.56: 11 residues within 4Å:- Chain K: I.20, S.23, Y.24, L.27, Q.50, M.57
- Chain L: S.23, Y.24, L.27, Q.50, M.57
4 PLIP interactions:1 interactions with chain L, 3 interactions with chain K- Hydrophobic interactions: L:L.27, K:I.20, K:Y.24, K:L.27
LFA.66: 14 residues within 4Å:- Chain M: I.20, S.23, Y.24, L.27, K.46, Q.50, M.57
- Chain N: I.20, S.23, Y.24, L.27, Q.50, L.53, M.57
9 PLIP interactions:5 interactions with chain M, 4 interactions with chain N- Hydrophobic interactions: M:I.20, M:Y.24, M:L.27, M:K.46, M:Q.50, N:I.20, N:Y.24, N:L.27, N:L.53
LFA.74: 15 residues within 4Å:- Chain O: S.23, Y.24, L.27, K.46, Q.50, L.53, M.57
- Chain P: I.20, S.23, Y.24, L.27, K.46, Q.50, L.53, M.57
10 PLIP interactions:7 interactions with chain P, 3 interactions with chain O- Hydrophobic interactions: P:I.20, P:Y.24, P:L.27, P:K.46, P:Q.50, P:L.53, P:L.53, O:Y.24, O:L.27, O:Q.50
LFA.86: 13 residues within 4Å:- Chain Q: S.23, Y.24, L.27, K.46, A.49, Q.50, L.53, M.57
- Chain R: I.20, S.23, L.27, K.46, Q.50
9 PLIP interactions:5 interactions with chain Q, 4 interactions with chain R- Hydrophobic interactions: Q:Y.24, Q:L.27, Q:A.49, Q:Q.50, Q:L.53, R:I.20, R:L.27, R:K.46, R:Q.50
LFA.97: 11 residues within 4Å:- Chain S: I.20, S.23, Y.24, L.27, Q.50, M.57
- Chain T: S.23, Y.24, L.27, Q.50, M.57
4 PLIP interactions:3 interactions with chain S, 1 interactions with chain T- Hydrophobic interactions: S:I.20, S:Y.24, S:L.27, T:L.27
LFA.107: 14 residues within 4Å:- Chain U: I.20, S.23, Y.24, L.27, K.46, Q.50, M.57
- Chain V: I.20, S.23, Y.24, L.27, Q.50, L.53, M.57
9 PLIP interactions:5 interactions with chain U, 4 interactions with chain V- Hydrophobic interactions: U:I.20, U:Y.24, U:L.27, U:K.46, U:Q.50, V:I.20, V:Y.24, V:L.27, V:L.53
LFA.115: 15 residues within 4Å:- Chain W: S.23, Y.24, L.27, K.46, Q.50, L.53, M.57
- Chain X: I.20, S.23, Y.24, L.27, K.46, Q.50, L.53, M.57
10 PLIP interactions:3 interactions with chain W, 7 interactions with chain X- Hydrophobic interactions: W:Y.24, W:L.27, W:Q.50, X:I.20, X:Y.24, X:L.27, X:K.46, X:Q.50, X:L.53, X:L.53
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kumar, M. et al., A single residue can modulate nanocage assembly in salt dependent ferritin. Nanoscale (2021)
- Release Date
- 2021-07-28
- Peptides
- Ferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
AJ
BK
CL
DM
EN
FO
GP
HQ
AR
BS
CT
DU
EV
FW
GX
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-24-mer
- Ligands
- 72 x SO4: SULFATE ION(Non-functional Binders)
- 39 x GOL: GLYCEROL(Non-functional Binders)
- 12 x LFA: EICOSANE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kumar, M. et al., A single residue can modulate nanocage assembly in salt dependent ferritin. Nanoscale (2021)
- Release Date
- 2021-07-28
- Peptides
- Ferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
AJ
BK
CL
DM
EN
FO
GP
HQ
AR
BS
CT
DU
EV
FW
GX
H