SMTL ID : 6tym.1

KEAP1 Kelch domain in complex with Compound 9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: F.19, R.20, H.259, T.260, F.261 Ligands: 08A.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.20, A:R.20, A:F.261

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain A: R.99 Ligands: 08A.3, 08A.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.99

2 x 08A: (3S)-3-[2-(benzenecarbonyl)-5-methyl-1,2,3,4-tetrahydroisoquinolin-7-yl]-3-(1-ethyl-4-methyl-1H-benzotriazol-5-yl)propanoic acid(Non-covalent)

08A.3: 12 residues within 4Å: Chain A: Y.18, R.64, N.66, N.71, N.98, R.99, Y.256, H.259, F.261 Ligands: GOL.1, DMS.2, 08A.4 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.18, A:Y.18, A:Y.256, A:F.261 Hydrogen bonds: A:Y.18, A:N.66 Water bridges: A:N.98, A:N.98 Salt bridges: A:R.64 pi-Cation interactions: A:R.64, A:R.64 08A.4: 19 residues within 4Å: Chain A: Y.18, G.48, R.99, I.145, G.146, F.162, R.167, S.192, G.193, Y.209, Q.214, S.239, A.240, Y.256, F.261, S.286, G.287 Ligands: DMS.2, 08A.3 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:R.99, A:I.145, A:Y.209, A:Y.209, A:Y.209, A:A.240, A:Y.256, A:Y.256, A:F.261 Hydrogen bonds: A:S.192, A:S.192, A:Q.214, A:S.239 Water bridges: A:R.99 Salt bridges: A:R.167 pi-Stacking: A:Y.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, B. et al., Design, synthesis and identification of novel, orally bioavailable non-covalent Nrf2 activators. Bioorg.Med.Chem.Lett. (2020)

Release Date

2020-01-15

Peptides

Kelch-like ECH-associated protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Kelch-like ECH-associated protein 1

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