SMTL ID : 6tzl.1

The structure of the Streptococcus gordonii surface protein SspB in complex with TEV peptide provides clues to the adherence of oral streptococcal adherence to salivary agglutinin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-tetramer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.33 Chain B: Q.131, S.132 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:K.33 Hydrogen bonds: B:S.132, B:S.132 SO4.2: 3 residues within 4Å: Chain C: Q.131, S.132 Chain D: K.33 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain C Salt bridges: D:K.33 Hydrogen bonds: C:S.132 Water bridges: C:N.133 SO4.3: 3 residues within 4Å: Chain C: K.307, Y.318, N.320 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Y.318, C:N.320 Salt bridges: C:K.307 SO4.4: 3 residues within 4Å: Chain C: K.107, S.108, K.111 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.108 SO4.5: 5 residues within 4Å: Chain C: K.203, K.205, K.277 Chain D: S.159, Q.160 12 PLIP interactions: 11 interactions with chain C, 1 interactions with chain D Water bridges: C:K.203, C:K.203, C:K.205, C:K.205, C:K.205, C:K.205, C:K.205, C:K.277 Salt bridges: C:K.203, C:K.205, C:K.277 Hydrogen bonds: D:Q.160 SO4.6: 2 residues within 4Å: Chain C: K.294 Chain D: K.117 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Salt bridges: C:K.294, D:K.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schormann, N. et al., The structure of the Streptococcus gordonii surface protein SspB in complex with TEV peptide provides clues to the adherence of oral streptococcal adherence to salivary agglutinin. To Be Published

Release Date

2020-08-19

Peptides

Surface protein adhesin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
D

D
A

Surface protein adhesin

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