SMTL ID : 6u0j.1

Crosslinked Crystal Structure of Malonyl-CoA Acyl Carrier Protein Transacylase, FabD, and Acyl Carrier Protein, AcpP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: M.21, L.22, P.280, G.281, N.301, E.302 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.22, A:G.281, A:N.301, A:E.302 EDO.2: 7 residues within 4Å: Chain A: T.5, Q.6, F.7, K.86, A.87, P.88, A.89 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.7, A:F.7, A:A.89 Water bridges: A:A.87 EDO.3: 2 residues within 4Å: Chain A: E.34, Q.82 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.34, A:Q.82 Water bridges: A:I.31, A:Q.82, A:Q.82 EDO.4: 3 residues within 4Å: Chain A: Q.6, A.89, Q.270 No protein-ligand interaction detected (PLIP) EDO.5: 4 residues within 4Å: Chain A: P.227, V.229, P.230, T.241 No protein-ligand interaction detected (PLIP) EDO.7: 1 residues within 4Å: Chain A: T.223 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.223 Water bridges: A:D.112, A:T.223 EDO.8: 1 residues within 4Å: Chain A: G.271 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 7 residues within 4Å: Chain A: Q.14, C.95, L.96, R.120, S.203, H.204 Ligands: 9EF.9 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.14, A:Q.14, A:L.96, A:S.203, A:S.203 Salt bridges: A:R.120, A:H.204

1 x 9EF: N-[2-(acetylamino)ethyl]-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide(Covalent)

9EF.9: 17 residues within 4Å: Chain A: Q.14, H.94, C.95, M.135, N.163, N.165, Q.169, V.171, L.195, L.197, V.199, H.204, V.283 Chain B: D.36, S.37, L.38 Ligands: SO4.6 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.195 Hydrogen bonds: A:Q.14, A:Q.14, A:N.163, A:N.165, A:Q.169, A:Q.169, B:S.37 Water bridges: A:V.283, A:G.286

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Misson, L.E. et al., Interfacial plasticity facilitates high reaction rate of E. coli FAS malonyl-CoA:ACP transacylase, FabD. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-07-22

Peptides

Malonyl CoA-acyl carrier protein transacylase: A
Acyl carrier protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Malonyl CoA-acyl carrier protein transacylase

Acyl carrier protein