SMTL ID : 6u1y.1

bcs1 AAA domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

homo-heptamer

Ligands

7 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 26 residues within 4Å: Chain A: R.36, S.40, V.41, V.42, L.43, P.82, G.83, C.84, G.85, K.86, S.87, S.88, N.182, Q.210, M.214, P.243, A.244, Q.247 Chain G: I.70, P.71, D.167, R.193, P.194, G.195, R.196 Ligands: MG.2 27 PLIP interactions: 5 interactions with chain G, 22 interactions with chain A Hydrogen bonds: G:R.193, G:R.193, G:R.196, G:R.196, A:R.36, A:R.36, A:V.42, A:G.83, A:C.84, A:C.84, A:G.85, A:K.86, A:K.86, A:S.87, A:S.88, A:S.88, A:N.182, A:N.182, A:Q.247 Salt bridges: G:R.193 Water bridges: A:G.80, A:P.81, A:S.87, A:S.87, A:S.87, A:T.180, A:Q.247 ANP.3: 27 residues within 4Å: Chain B: R.36, S.40, V.41, V.42, L.43, P.82, G.83, C.84, G.85, K.86, S.87, S.88, F.89, N.182, Q.210, M.214, P.243, A.244, Q.247 Chain E: I.70, P.71, D.167, R.193, P.194, G.195, R.196 Ligands: MG.4 27 PLIP interactions: 22 interactions with chain B, 5 interactions with chain E Hydrogen bonds: B:R.36, B:R.36, B:V.42, B:G.83, B:C.84, B:C.84, B:G.85, B:G.85, B:K.86, B:K.86, B:S.87, B:S.88, B:S.88, B:N.182, B:N.182, B:Q.247, E:R.193, E:R.193, E:R.196, E:R.196 Water bridges: B:S.87, B:S.87, B:S.87, B:S.87, B:N.182, B:Q.247 Salt bridges: E:R.193 ANP.5: 27 residues within 4Å: Chain B: I.70, P.71, D.167, R.193, P.194, G.195, R.196 Chain C: R.36, S.40, V.41, V.42, L.43, P.82, G.83, C.84, G.85, K.86, S.87, S.88, F.89, N.182, Q.210, M.214, P.243, A.244, Q.247 Ligands: MG.6 27 PLIP interactions: 22 interactions with chain C, 5 interactions with chain B Hydrogen bonds: C:R.36, C:R.36, C:V.42, C:G.83, C:C.84, C:C.84, C:G.85, C:K.86, C:K.86, C:S.87, C:S.88, C:S.88, C:N.182, C:N.182, C:Q.247, B:R.193, B:R.193, B:R.196, B:R.196 Water bridges: C:S.87, C:S.87, C:S.87, C:S.87, C:T.180, C:Q.210, C:Q.247 Salt bridges: B:R.193 ANP.7: 26 residues within 4Å: Chain A: I.70, P.71, D.167, R.193, P.194, G.195, R.196 Chain D: R.36, S.40, V.41, V.42, L.43, P.82, G.83, C.84, G.85, K.86, S.87, S.88, N.182, Q.210, M.214, P.243, A.244, Q.247 Ligands: MG.8 26 PLIP interactions: 21 interactions with chain D, 5 interactions with chain A Hydrogen bonds: D:R.36, D:R.36, D:V.42, D:G.83, D:C.84, D:C.84, D:G.85, D:K.86, D:K.86, D:S.87, D:S.88, D:S.88, D:N.182, D:N.182, D:Q.247, A:R.193, A:R.193, A:R.196, A:R.196 Water bridges: D:S.87, D:S.87, D:S.87, D:S.87, D:T.180, D:Q.247 Salt bridges: A:R.193 ANP.9: 27 residues within 4Å: Chain E: R.36, S.40, V.41, V.42, L.43, P.82, G.83, C.84, G.85, K.86, S.87, S.88, F.89, N.182, Q.210, M.214, P.243, A.244, Q.247 Chain F: I.70, P.71, D.167, R.193, P.194, G.195, R.196 Ligands: MG.10 25 PLIP interactions: 5 interactions with chain F, 20 interactions with chain E Hydrogen bonds: F:R.193, F:R.193, F:R.196, F:R.196, E:R.36, E:R.36, E:V.42, E:G.83, E:C.84, E:C.84, E:G.85, E:K.86, E:K.86, E:S.87, E:S.87, E:S.88, E:S.88, E:N.182, E:N.182, E:Q.247 Salt bridges: F:R.193 Water bridges: E:G.80, E:P.81, E:T.180, E:Q.247 ANP.11: 26 residues within 4Å: Chain D: I.70, P.71, D.167, R.193, P.194, G.195, R.196 Chain F: R.36, S.40, V.41, V.42, L.43, P.82, G.83, C.84, G.85, K.86, S.87, S.88, N.182, Q.210, M.214, P.243, A.244, Q.247 Ligands: MG.12 26 PLIP interactions: 5 interactions with chain D, 21 interactions with chain F Hydrogen bonds: D:R.193, D:R.193, D:R.196, D:R.196, F:R.36, F:R.36, F:V.42, F:G.83, F:C.84, F:C.84, F:G.85, F:K.86, F:K.86, F:S.87, F:S.88, F:S.88, F:N.182, F:N.182, F:Q.247 Salt bridges: D:R.193 Water bridges: F:G.80, F:P.81, F:S.87, F:S.87, F:S.87, F:Q.247 ANP.13: 27 residues within 4Å: Chain C: I.70, P.71, D.167, R.193, P.194, G.195, R.196 Chain G: R.36, S.40, V.41, V.42, L.43, P.82, G.83, C.84, G.85, K.86, S.87, S.88, F.89, N.182, Q.210, M.214, P.243, A.244, Q.247 Ligands: MG.14 27 PLIP interactions: 22 interactions with chain G, 5 interactions with chain C Hydrogen bonds: G:R.36, G:R.36, G:V.42, G:G.83, G:C.84, G:C.84, G:G.85, G:K.86, G:K.86, G:S.87, G:S.88, G:S.88, G:N.182, G:N.182, G:Q.247, C:R.193, C:R.193, C:R.196, C:R.196 Water bridges: G:G.80, G:P.81, G:S.87, G:S.87, G:S.87, G:T.180, G:Q.247 Salt bridges: C:R.193

7 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: S.87, E.132 Chain G: R.193, R.196 Ligands: ANP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:S.87, H2O.1, H2O.3, H2O.65 MG.4: 5 residues within 4Å: Chain B: S.87, E.132 Chain E: R.193, R.196 Ligands: ANP.3 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:S.87, H2O.14, H2O.16, H2O.46 MG.6: 6 residues within 4Å: Chain B: R.193, R.196 Chain C: K.86, S.87, E.132 Ligands: ANP.5 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:S.87, H2O.13, H2O.24, H2O.26 MG.8: 4 residues within 4Å: Chain A: R.193, R.196 Chain D: S.87 Ligands: ANP.7 4 PLIP interactions: 1 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:S.87, H2O.3, H2O.35, H2O.37 MG.10: 5 residues within 4Å: Chain E: K.86, S.87 Chain F: R.193, R.196 Ligands: ANP.9 4 PLIP interactions: 1 interactions with chain E, 3 Ligand-Water interactions Metal complexes: E:S.87, H2O.46, H2O.46, H2O.46 MG.12: 4 residues within 4Å: Chain D: R.193, R.196 Chain F: S.87 Ligands: ANP.11 4 PLIP interactions: 1 interactions with chain F, 3 Ligand-Water interactions Metal complexes: F:S.87, H2O.37, H2O.55, H2O.55 MG.14: 4 residues within 4Å: Chain C: R.193, R.196 Chain G: S.87 Ligands: ANP.13 4 PLIP interactions: 1 interactions with chain G, 3 Ligand-Water interactions Metal complexes: G:S.87, H2O.25, H2O.65, H2O.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tang, W.K. et al., Structures of AAA protein translocase Bcs1 suggest translocation mechanism of a folded protein. Nat.Struct.Mol.Biol. (2020)

Release Date

2020-02-05

Peptides

Mitochondrial chaperone BCS1: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

Mitochondrial chaperone BCS1