SMTL ID : 6u2l.1

EM structure of MPEG-1 (L425K, beta conformation) soluble pre-pore complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-32-mer

Ligands

32 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 6 residues within 4Å: Chain B: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 6 residues within 4Å: Chain C: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 6 residues within 4Å: Chain D: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 6 residues within 4Å: Chain E: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 6 residues within 4Å: Chain F: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 6 residues within 4Å: Chain G: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 6 residues within 4Å: Chain H: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 6 residues within 4Å: Chain I: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 6 residues within 4Å: Chain J: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 6 residues within 4Å: Chain K: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 6 residues within 4Å: Chain L: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 6 residues within 4Å: Chain M: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.14: 6 residues within 4Å: Chain N: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.15: 6 residues within 4Å: Chain O: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.16: 6 residues within 4Å: Chain P: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.17: 6 residues within 4Å: Chain Q: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.18: 6 residues within 4Å: Chain R: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.19: 6 residues within 4Å: Chain S: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.20: 6 residues within 4Å: Chain T: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.21: 6 residues within 4Å: Chain U: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.22: 6 residues within 4Å: Chain V: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.23: 6 residues within 4Å: Chain W: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.24: 6 residues within 4Å: Chain X: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.25: 6 residues within 4Å: Chain Y: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.26: 6 residues within 4Å: Chain Z: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.27: 6 residues within 4Å: Chain 0: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.28: 6 residues within 4Å: Chain 1: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.29: 6 residues within 4Å: Chain 2: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.30: 6 residues within 4Å: Chain 3: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.31: 6 residues within 4Å: Chain 4: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.32: 6 residues within 4Å: Chain 5: R.205, S.207, F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP)

32 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.33: 3 residues within 4Å: Chain A: N.168 Chain P: L.416, D.434 Ligand excluded by PLIP NAG.34: 2 residues within 4Å: Chain A: L.416 Chain B: N.168 Ligand excluded by PLIP NAG.35: 3 residues within 4Å: Chain B: L.416, D.434 Chain C: N.168 Ligand excluded by PLIP NAG.36: 3 residues within 4Å: Chain C: L.416, D.434 Chain D: N.168 Ligand excluded by PLIP NAG.37: 3 residues within 4Å: Chain D: L.416, D.434 Chain E: N.168 Ligand excluded by PLIP NAG.38: 2 residues within 4Å: Chain E: L.416 Chain F: N.168 Ligand excluded by PLIP NAG.39: 2 residues within 4Å: Chain F: L.416 Chain G: N.168 Ligand excluded by PLIP NAG.40: 3 residues within 4Å: Chain G: L.416, D.434 Chain H: N.168 Ligand excluded by PLIP NAG.41: 3 residues within 4Å: Chain H: L.416, D.434 Chain I: N.168 Ligand excluded by PLIP NAG.42: 2 residues within 4Å: Chain I: L.416 Chain J: N.168 Ligand excluded by PLIP NAG.43: 3 residues within 4Å: Chain J: L.416, D.434 Chain K: N.168 Ligand excluded by PLIP NAG.44: 3 residues within 4Å: Chain K: L.416, D.434 Chain L: N.168 Ligand excluded by PLIP NAG.45: 3 residues within 4Å: Chain L: L.416, D.434 Chain M: N.168 Ligand excluded by PLIP NAG.46: 2 residues within 4Å: Chain M: L.416 Chain N: N.168 Ligand excluded by PLIP NAG.47: 2 residues within 4Å: Chain N: L.416 Chain O: N.168 Ligand excluded by PLIP NAG.48: 3 residues within 4Å: Chain O: L.416, D.434 Chain P: N.168 Ligand excluded by PLIP NAG.49: 3 residues within 4Å: Chain 5: L.416, D.434 Chain Q: N.168 Ligand excluded by PLIP NAG.50: 2 residues within 4Å: Chain Q: L.416 Chain R: N.168 Ligand excluded by PLIP NAG.51: 3 residues within 4Å: Chain R: L.416, D.434 Chain S: N.168 Ligand excluded by PLIP NAG.52: 3 residues within 4Å: Chain S: L.416, D.434 Chain T: N.168 Ligand excluded by PLIP NAG.53: 3 residues within 4Å: Chain T: L.416, D.434 Chain U: N.168 Ligand excluded by PLIP NAG.54: 2 residues within 4Å: Chain U: L.416 Chain V: N.168 Ligand excluded by PLIP NAG.55: 2 residues within 4Å: Chain V: L.416 Chain W: N.168 Ligand excluded by PLIP NAG.56: 3 residues within 4Å: Chain W: L.416, D.434 Chain X: N.168 Ligand excluded by PLIP NAG.57: 3 residues within 4Å: Chain X: L.416, D.434 Chain Y: N.168 Ligand excluded by PLIP NAG.58: 2 residues within 4Å: Chain Y: L.416 Chain Z: N.168 Ligand excluded by PLIP NAG.59: 3 residues within 4Å: Chain 0: N.168 Chain Z: L.416, D.434 Ligand excluded by PLIP NAG.60: 3 residues within 4Å: Chain 0: L.416, D.434 Chain 1: N.168 Ligand excluded by PLIP NAG.61: 2 residues within 4Å: Chain 1: L.416 Chain 2: N.168 Ligand excluded by PLIP NAG.62: 3 residues within 4Å: Chain 2: L.416, D.434 Chain 3: N.168 Ligand excluded by PLIP NAG.63: 2 residues within 4Å: Chain 3: L.416 Chain 4: N.168 Ligand excluded by PLIP NAG.64: 3 residues within 4Å: Chain 4: L.416, D.434 Chain 5: N.168 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pang, S.S. et al., The cryo-EM structure of the acid activatable pore-forming immune effector Macrophage-expressed gene 1. Nat Commun (2019)

Release Date

2019-09-25

Peptides

Macrophage-expressed gene 1 protein: ABCDEFGHIJKLMNOPQRSTUVWXYZ012345

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
AA

R
BB

S
CC

T
DD

U
EE

V
FF

W
GG

X
HH

Y
II

Z
JJ

0
KK

1
LL

2
MM

3
NN

4
OO

5
PP

Macrophage-expressed gene 1 protein

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