SMTL ID : 6u3f.1

Structure-based discovery of a novel small-molecule inhibitor of methicillin-resistant S. aureus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

2 x PQJ: fos-choline-14(Non-covalent)

PQJ.1: 8 residues within 4Å: Chain A: N.173, W.176, Y.179, E.191, L.194, G.195, S.196, R.197 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.197 Salt bridges: A:E.191 pi-Cation interactions: A:W.176 PQJ.2: 7 residues within 4Å: Chain A: T.71, S.199, N.200, L.201, N.202, W.256, W.261 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.71 pi-Cation interactions: A:W.256

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: W.176, H.185, R.197 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.185, A:R.197 SO4.4: 3 residues within 4Å: Chain A: V.215, G.219, N.220 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.220 Water bridges: A:N.58, A:R.218, A:N.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, J. et al., Structure-based discovery of a small-molecule inhibitor of methicillin-resistantStaphylococcus aureusvirulence. J.Biol.Chem. (2020)

Release Date

2020-03-25

Peptides

Panton-Valentine Leucocidin F: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Panton-Valentine Leucocidin F

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