SMTL ID : 6u3y.2 (1 other biounit)

Structure-based discovery of a novel small-molecule inhibitor of methicillin-resistant S. aureus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: S.21, S.22, D.23, K.24, H.283 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.23, A:D.23, A:K.24 SO4.2: 3 residues within 4Å: Chain A: K.49, K.133, T.134 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.134, A:T.134 Salt bridges: A:K.49, A:K.133 SO4.3: 3 residues within 4Å: Chain A: K.57, R.232, R.263 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.57, A:R.232, A:R.263 SO4.4: 5 residues within 4Å: Chain A: F.76, K.159, H.173, H.257, N.258 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.258 Salt bridges: A:K.159, A:H.173, A:H.257 SO4.5: 2 residues within 4Å: Chain A: R.241, T.243 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.243, A:T.243 Salt bridges: A:R.241 SO4.6: 3 residues within 4Å: Chain A: T.66, D.67, H.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.66, A:D.67, A:D.67 Salt bridges: A:H.68

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.7: 2 residues within 4Å: Chain A: N.150, S.151 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, J. et al., Structure-based discovery of a small-molecule inhibitor of methicillin-resistantStaphylococcus aureusvirulence. J.Biol.Chem. (2020)

Release Date

2020-03-25

Peptides

Gamma-hemolysin subunit A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Gamma-hemolysin subunit A

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