SMTL ID : 6u41.1

1.7 angstrom structure of a pathogenic human Syt 1 C2B (D304G)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: Y.47, K.49, K.63, L.98, N.106 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.47, A:Y.47, A:N.106 Water bridges: A:N.106, A:N.106 Salt bridges: A:K.49, A:K.63 SO4.2: 1 residues within 4Å: Chain A: R.134 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.134, A:R.134, A:R.134 Salt bridges: A:R.134 SO4.3: 3 residues within 4Å: Chain A: G.56, K.57, R.58 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.58 SO4.4: 4 residues within 4Å: Chain A: K.49, H.51, R.58, K.61 4 PLIP interactions: 4 interactions with chain A Salt bridges: A:K.49, A:H.51, A:R.58, A:K.61 SO4.5: 3 residues within 4Å: Chain A: T.70, L.71, N.72 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.71, A:N.72, A:N.72 Water bridges: A:T.70, A:N.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradberry, M.M. et al., Molecular Basis for Synaptotagmin-1-Associated Neurodevelopmental Disorder. Neuron (2020)

Release Date

2020-05-13

Peptides

Synaptotagmin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Synaptotagmin-1