SMTL ID : 6u45.2 (1 other biounit)

Crystal structure of Methanoperedens nitroreducens elongation factor 2 bound to GMPPCP and magnesium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x GCP: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER(Non-covalent)

GCP.1: 18 residues within 4Å: Chain A: I.33, D.34, H.35, G.36, K.37, T.38, T.39, I.73, T.74, G.100, N.151, K.152, D.154, R.155, S.206, A.207, L.208 Ligands: MG.2 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:D.34, A:H.35, A:G.36, A:K.37, A:K.37, A:K.37, A:T.38, A:T.38, A:T.39, A:T.39, A:T.74, A:G.100, A:N.151, A:K.152, A:K.152, A:S.206, A:A.207, A:L.208 Water bridges: A:T.39, A:T.74, A:T.74, A:T.74, A:H.101, A:R.155 Salt bridges: A:D.154

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.38, T.74 Ligands: GCP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.38, A:T.74, H2O.2, H2O.3

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: L.497, Q.498, I.501, K.584 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fenwick, M.K. et al., Structural basis of elongation factor 2 switching. Curr Res Struct Biol (2020)

Release Date

2020-03-18

Peptides

Elongation factor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Elongation factor 2

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