SMTL ID : 6u4a.2 (1 other biounit)

BRD3-BD1 in complex with the cyclic peptide 3.1_3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: H.34, Q.35 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.35 Salt bridges: A:H.34

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: K.16, Q.21, N.25 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.16, A:Q.21, A:N.25 GOL.3: 4 residues within 4Å: Chain A: N.18, Q.21, Y.22, V.26 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.18 Water bridges: A:N.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patel, K. et al., Cyclic peptides can engage a single binding pocket through highly divergent modes. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-08-19

Peptides

Bromodomain-containing protein 3: A
cyclic peptide 3.1_3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Bromodomain-containing protein 3

cyclic peptide 3.1_3

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