SMTL ID : 6u5a.1

Crystal structure of Equine Serum Albumin complex with 6-MNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

7 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 4 residues within 4Å: Chain A: R.217 Ligands: UNX.2, UNX.3, UNX.4 No protein-ligand interaction detected (PLIP) UNX.2: 3 residues within 4Å: Chain A: C.447, N.450 Ligands: UNX.1 No protein-ligand interaction detected (PLIP) UNX.3: 5 residues within 4Å: Chain A: K.194, R.217, K.221 Ligands: UNX.1, UNX.4 No protein-ligand interaction detected (PLIP) UNX.4: 4 residues within 4Å: Chain A: W.213, R.217 Ligands: UNX.1, UNX.3 No protein-ligand interaction detected (PLIP) UNX.12: 3 residues within 4Å: Chain A: L.190 Ligands: UNX.13, UNX.14 No protein-ligand interaction detected (PLIP) UNX.13: 5 residues within 4Å: Chain A: T.428, L.454, A.455 Ligands: UNX.12, UNX.14 No protein-ligand interaction detected (PLIP) UNX.14: 4 residues within 4Å: Chain A: V.432, H.451 Ligands: UNX.12, UNX.13 No protein-ligand interaction detected (PLIP)

3 x PWY: (6-methoxynaphthalen-2-yl)acetic acid(Non-covalent)

PWY.5: 13 residues within 4Å: Chain A: L.386, N.390, C.391, F.402, R.409, Y.410, L.429, V.432, G.433, C.437, S.448, L.452, S.488 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:N.390, A:F.402, A:L.452, A:L.452 Hydrogen bonds: A:Y.410 Water bridges: A:K.413 Salt bridges: A:R.409, A:K.413 PWY.6: 10 residues within 4Å: Chain A: R.208, A.212, D.323, L.326, G.327, A.349, K.350, S.479, L.480, A.481 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.212, A:A.349, A:K.350 Hydrogen bonds: A:L.480, A:A.481 Salt bridges: A:K.350 PWY.7: 8 residues within 4Å: Chain A: L.393, D.401, N.404, A.405, L.528, K.540, K.544, L.547 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.393, A:D.401, A:N.404, A:A.405, A:K.540, A:K.544, A:K.544 Salt bridges: A:K.540

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 4 residues within 4Å: Chain A: A.303, L.304, A.305, R.336 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.304, A:A.305 Salt bridges: A:R.336 SO4.9: 3 residues within 4Å: Chain A: G.206, E.207, R.208 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.207, A:R.208 Water bridges: A:A.209 SO4.10: 4 residues within 4Å: Chain A: K.412, T.539, K.540, E.541 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.540 Salt bridges: A:K.412, A:K.540 SO4.11: 3 residues within 4Å: Chain A: Q.416, K.499, K.533 3 PLIP interactions: 3 interactions with chain A Water bridges: A:T.419 Salt bridges: A:K.499, A:K.533

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Czub, M.P. et al., Albumin-Based Transport of Nonsteroidal Anti-Inflammatory Drugs in Mammalian Blood Plasma. J.Med.Chem. (2020)

Release Date

2019-09-04

Peptides

Serum albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serum albumin

Related Entries With Identical Sequence