SMTL ID : 6u5l.1

Structure of human ULK4 in complex with an inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x 3RJ: N~2~-(1H-benzimidazol-6-yl)-N~4~-(5-cyclobutyl-1H-pyrazol-3-yl)quinazoline-2,4-diamine(Non-covalent)

3RJ.1: 20 residues within 4Å: Chain A: I.12, G.13, R.14, G.15, T.18, V.20, A.33, L.35, W.48, V.61, L.75, V.77, E.78, L.79, C.80, T.81, G.83, L.130, S.140, N.141 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.20, A:V.20, A:A.33, A:L.35, A:W.48, A:V.77, A:L.130 Hydrogen bonds: A:E.78, A:C.80, A:C.80, A:N.141 Water bridges: A:I.12, A:R.14

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: F.6, R.25, N.30, V.32, H.64, E.65, V.76 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.30 GOL.3: 5 residues within 4Å: Chain A: R.42, W.66, Y.67, E.68, L.73 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.42, A:W.66, A:E.68 GOL.4: 6 residues within 4Å: Chain A: L.8, Y.21, C.36, H.72, W.74 Ligands: PEG.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.21 GOL.5: 4 residues within 4Å: Chain A: R.53, F.63, H.64, E.65 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.53 Water bridges: A:R.53

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 10 residues within 4Å: Chain A: K.17, T.18, V.19, Y.21, C.36, T.37, D.38, N.71, H.72 Ligands: GOL.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Khamrui, S. et al., High-Resolution Structure and Inhibition of the Schizophrenia-Linked Pseudokinase ULK4. J.Am.Chem.Soc. (2020)

Release Date

2019-12-25

Peptides

Serine/threonine-protein kinase ULK4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase ULK4