SMTL ID : 6u66.1

Structure of the trimeric globular domain of Adiponectin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.99 Å

Oligo State

homo-trimer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.85, Q.86, D.93 Chain B: N.91, V.92, D.93 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Metal complexes: B:V.92, B:D.93, A:D.85, A:Q.86, A:D.93 CA.3: 6 residues within 4Å: Chain B: D.85, Q.86, D.93 Chain C: N.91, V.92, D.93 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain B Metal complexes: C:V.92, C:D.93, B:D.85, B:Q.86, B:D.93 CA.4: 6 residues within 4Å: Chain A: N.91, V.92, D.93 Chain C: D.85, Q.86, D.93 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain A Metal complexes: C:D.85, C:Q.86, C:D.93, A:V.92, A:D.93

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: Q.94 Chain B: Q.94 Chain C: Q.94 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: A:Q.94, A:Q.94, C:Q.94, B:Q.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pascolutti, R. et al., Mapping and engineering the interaction between adiponectin and T-cadherin. J.Biol.Chem. (2020)

Release Date

2020-01-22

Peptides

Adiponectin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Adiponectin