SMTL ID : 6u6t.1

Neuronal growth regulator 1 (NEGR1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.01 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 11 residues within 4Å: Chain A: N.41, R.42, I.46, S.54, D.56, R.58, V.59, I.73, T.79, D.80, Y.84 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.79 NAG-NAG-BMA.3: 12 residues within 4Å: Chain B: N.41, R.42, I.46, S.54, D.56, R.58, V.59, I.73, D.77, T.79, D.80, Y.84 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.79

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.2: 3 residues within 4Å: Chain A: T.122, N.123, Y.159 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.123 Hydrophobic interactions: A:Y.159

2 x CA: CALCIUM ION(Non-covalent)

CA.4: 2 residues within 4Å: Chain A: Y.155, D.157 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.157 CA.5: 1 residues within 4Å: Chain A: D.111 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.111

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 2 residues within 4Å: Chain B: N.123, Y.159 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Venkannagari, H. et al., Highly Conserved Molecular Features in IgLONs Contrast Their Distinct Structural and Biological Outcomes. J.Mol.Biol. (2020)

Release Date

2020-08-12

Peptides

Neuronal growth regulator 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Neuronal growth regulator 1