- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.32 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 4 residues within 4Å:- Chain A: E.144, R.188, Y.216, Y.219
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.144, A:R.188
EDO.4: 6 residues within 4Å:- Chain A: H.166, A.171, V.172, G.173, F.174, V.175
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:H.166, A:V.172, A:G.173
EDO.5: 5 residues within 4Å:- Chain A: T.213, N.215, V.243, P.244, S.245
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.245, A:S.245
EDO.16: 4 residues within 4Å:- Chain B: E.144, R.188, Y.216, Y.219
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.144, B:R.188
EDO.17: 6 residues within 4Å:- Chain B: H.166, A.171, V.172, G.173, F.174, V.175
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:H.166, B:V.172, B:G.173
EDO.18: 5 residues within 4Å:- Chain B: T.213, N.215, V.243, P.244, S.245
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.245, B:S.245
- 16 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 3 residues within 4Å:- Chain A: K.132, I.133, V.206
Ligand excluded by PLIPCL.7: 2 residues within 4Å:- Chain A: R.208, R.209
Ligand excluded by PLIPCL.8: 2 residues within 4Å:- Chain A: Y.219, S.221
Ligand excluded by PLIPCL.9: 5 residues within 4Å:- Chain A: A.242, S.245, P.270, F.271
- Chain B: V.172
Ligand excluded by PLIPCL.10: 4 residues within 4Å:- Chain A: S.141, I.142, N.215, K.295
Ligand excluded by PLIPCL.11: 3 residues within 4Å:- Chain A: R.165, I.167, R.209
Ligand excluded by PLIPCL.12: 5 residues within 4Å:- Chain A: R.188, S.191, V.214, Y.216, V.243
Ligand excluded by PLIPCL.13: 3 residues within 4Å:- Chain A: P.244, N.294, K.295
Ligand excluded by PLIPCL.19: 3 residues within 4Å:- Chain B: K.132, I.133, V.206
Ligand excluded by PLIPCL.20: 2 residues within 4Å:- Chain B: R.208, R.209
Ligand excluded by PLIPCL.21: 2 residues within 4Å:- Chain B: Y.219, S.221
Ligand excluded by PLIPCL.22: 5 residues within 4Å:- Chain A: V.172
- Chain B: A.242, S.245, P.270, F.271
Ligand excluded by PLIPCL.23: 4 residues within 4Å:- Chain B: S.141, I.142, N.215, K.295
Ligand excluded by PLIPCL.24: 3 residues within 4Å:- Chain B: R.165, I.167, R.209
Ligand excluded by PLIPCL.25: 5 residues within 4Å:- Chain B: R.188, S.191, V.214, Y.216, V.243
Ligand excluded by PLIPCL.26: 3 residues within 4Å:- Chain B: P.244, N.294, K.295
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Venkannagari, H. et al., Highly Conserved Molecular Features in IgLONs Contrast Their Distinct Structural and Biological Outcomes. J.Mol.Biol. (2020)
- Release Date
- 2020-08-12
- Peptides
- Neurotrimin: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.32 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 16 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Venkannagari, H. et al., Highly Conserved Molecular Features in IgLONs Contrast Their Distinct Structural and Biological Outcomes. J.Mol.Biol. (2020)
- Release Date
- 2020-08-12
- Peptides
- Neurotrimin: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A