SMTL ID : 6u8t.1 (1 other biounit)

Crystal structure of YopT domain of Pasteurella Multocida PfhB2-toxin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

homo-dimer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: S.13, V.173, E.181, T.183 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.13, A:E.181

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: H.220, A.221 Chain B: V.50, G.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.221 PEG.3: 4 residues within 4Å: Chain A: S.186, Q.188, K.189, S.192 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.186, A:Q.188, A:S.192, A:S.192 Water bridges: A:E.170, A:Q.188

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 1 residues within 4Å: Chain B: V.123 1 PLIP interactions: 1 interactions with chain B Water bridges: B:K.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, S. et al., Crystal structure of YopT domain of Pasteurella Multocida PfhB2-Toxin. To Be Published

Release Date

2020-09-09

Peptides

PfhB2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PfhB2

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