SMTL ID : 6u9k.2 (1 other biounit)

MLL1 SET N3861I/Q3867L bound to inhibitor 18 (TC-5153)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.98, C.146, C.148, C.153 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.98, A:C.146, A:C.148, A:C.153

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: M.5, R.8, Y.103, R.105, I.107, F.118 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.8, A:Y.103, A:R.105 Water bridges: A:R.8

1 x Q2V: 5'-([(3S)-3-amino-3-carboxypropyl]{[1-(3,3-diphenylpropyl)azetidin-3-yl]methyl}amino)-5'-deoxyadenosine(Non-covalent)

Q2V.3: 22 residues within 4Å: Chain A: I.27, H.28, G.29, R.30, G.68, I.69, G.70, C.71, Y.72, R.92, F.93, I.94, N.95, H.96, S.97, Y.133, F.135, P.145, C.146, N.147, C.148, L.157 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:R.30, A:N.95, A:N.95, A:H.96, A:H.96, A:Y.133, A:N.147 Water bridges: A:H.28, A:R.30, A:C.71 Salt bridges: A:H.28 pi-Cation interactions: A:H.28, A:Y.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chern, T.R. et al., Discovery of Potent Small-Molecule Inhibitors of MLL Methyltransferase. Acs Med.Chem.Lett. (2020)

Release Date

2020-07-01

Peptides

Histone-lysine N-methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Histone-lysine N-methyltransferase

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