SMTL ID : 6u9q.1

Crystal Structure Analysis of DNA-BCL11A Znf domain complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.19, C.22, H.35, H.39 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.19, A:C.22, A:H.35, A:H.39 ZN.2: 5 residues within 4Å: Chain A: C.47, L.49, C.50, H.63, H.67 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.47, A:C.50, A:H.63, A:H.67 ZN.3: 4 residues within 4Å: Chain A: C.77, C.80, H.93, H.98 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.77, A:C.80, A:H.93, A:H.98

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 4 residues within 4Å: Chain A: F.26, K.27, N.28, N.31 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.27, A:N.28, A:N.28, A:N.31 Salt bridges: A:K.27 PO4.5: 3 residues within 4Å: Chain A: N.51, K.96, W.97 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.51 Salt bridges: A:K.96

1 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 4 residues within 4Å: Chain A: S.58, T.61 Chain C: T.4, G.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Viennet, T. et al., Structural insights into the DNA-binding mechanism of BCL11A: The integral role of ZnF6. Structure (2024)

Release Date

2020-09-16

Peptides

B-cell lymphoma/leukemia 11A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B-cell lymphoma/leukemia 11A

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