SMTL ID : 6uav.1

Crystal structure of a GH128 (subgroup II) endo-beta-1,3-glucanase from Pseudomonas viridiflava (PvGH128_II)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: Y.164, G.165 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.165, A:E.209 Water bridges: A:L.166, A:Q.206, A:Q.206, A:Q.206 SO4.2: 4 residues within 4Å: Chain A: H.73, P.74, G.75, I.76 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.73, A:G.75, A:I.76 SO4.3: 4 residues within 4Å: Chain A: A.146, H.147, Q.148, R.150 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.147, A:R.150

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: N.122, W.123, W.161, Y.162 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.122, A:Y.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Santos, C.R. et al., Structural insights into beta-1,3-glucan cleavage by a glycoside hydrolase family. Nat.Chem.Biol. (2020)

Release Date

2020-05-20

Peptides

Glyco_hydro_cc domain-containing protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glyco_hydro_cc domain-containing protein