SMTL ID : 6ubi.2 (1 other biounit)

N123-VRC34.05 HIV neutralizing antibody in complex with HIV fusion peptide residue 512-519

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- VAL- GLY- ILE- GLY- ALA- VAL- PHE: HIV fusion peptide 512-519(Non-covalent)

ALA-VAL-GLY-ILE-GLY-ALA-VAL-PHE.1: 19 residues within 4Å: Chain A: K.28, G.30, A.31, Y.33, F.50, H.52, D.57, A.58, V.59, T.101, D.104, E.105, A.106 Chain B: E.32, L.91, N.92, S.93, F.94, L.96 18 PLIP interactions: 3 interactions with chain B, 15 interactions with chain A Hydrophobic interactions: B:F.94, A:K.28, A:A.31, A:Y.33, A:F.50, A:F.50, A:H.52, A:D.57, A:V.59, A:A.106 Hydrogen bonds: B:E.32, B:L.91, A:Y.33, A:Y.33, A:D.104, A:A.106 Water bridges: A:T.55, A:D.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shen, C.H. et al., VRC34-Antibody Lineage Development Reveals How a Required Rare Mutation Shapes the Maturation of a Broad HIV-Neutralizing Lineage. Cell Host Microbe (2020)

Release Date

2020-03-18

Peptides

VRC34.05 heavy chain: A
VRC34.05 light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

VRC34.05 heavy chain

VRC34.05 light chain

Related Entries With Identical Sequence