SMTL ID : 6uca.1 (5 other biounits)

Crystal structure of human ZCCHC4 in complex with SAH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 23 residues within 4Å: Chain A: A.44, T.147, N.148, A.149, Q.150, Y.151, L.152, F.153, G.177, T.178, P.179, R.180, L.181, D.203, I.204, D.205, Y.220, N.221, M.222, F.223, D.254, P.256, Y.318 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.148, A:Q.150, A:Y.151, A:Y.151, A:F.153, A:R.180, A:L.181, A:I.204, A:N.221, A:M.222, A:D.254

6 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.18, P.19, H.20, C.42, C.51 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.18, A:H.20, A:C.42, A:C.51 ZN.3: 5 residues within 4Å: Chain A: C.103, T.105, C.106, H.118, H.121 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.103, A:C.106, A:H.118, A:H.121 ZN.4: 5 residues within 4Å: Chain A: C.358, C.361, H.371, S.377, C.378 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.358, A:C.361, A:H.371, A:C.378 ZN.5: 5 residues within 4Å: Chain A: C.372, C.375, H.388, K.394, C.395 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.372, A:C.375, A:H.388, A:C.395 ZN.6: 4 residues within 4Å: Chain A: C.389, C.392, H.402, C.409 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.389, A:C.392, A:H.402, A:C.409 ZN.7: 4 residues within 4Å: Chain A: C.403, C.406, H.414, C.416 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.403, A:C.406, A:H.414, A:C.416

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, W. et al., Structure and regulation of ZCCHC4 in m6A-methylation of 28S rRNA. Nat Commun (2019)

Release Date

2019-10-16

Peptides

rRNA N6-adenosine-methyltransferase ZCCHC4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

rRNA N6-adenosine-methyltransferase ZCCHC4

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