SMTL ID : 6uce.1

N123-VRC34_pI3 HIV neutralizing antibody in complex with HIV fusion peptide residue 512-519

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- VAL- GLY- ILE- GLY- ALA- VAL- PHE: HIV fusion peptide(Non-covalent)

ALA-VAL-GLY-ILE-GLY-ALA-VAL-PHE.1: 19 residues within 4Å: Chain A: E.32, M.91, S.92, S.93, Y.94, L.96 Chain B: T.30, G.31, P.33, W.50, N.52, H.54, D.57, T.58, T.59, Y.101, N.104, E.105, A.106 23 PLIP interactions: 7 interactions with chain A, 16 interactions with chain B Hydrophobic interactions: A:Y.94, A:Y.94, A:L.96, B:P.33, B:N.52, B:Y.101, B:E.105, B:A.106 Hydrogen bonds: A:E.32, A:M.91, A:Y.94, A:Y.94, B:T.30, B:N.52, B:Y.101, B:Y.101, B:A.106 Water bridges: B:S.55, B:Y.101, B:N.104, B:N.104, B:N.104, B:N.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shen, C.H. et al., VRC34-Antibody Lineage Development Reveals How a Required Rare Mutation Shapes the Maturation of a Broad HIV-Neutralizing Lineage. Cell Host Microbe (2020)

Release Date

2020-03-18

Peptides

N123-VRC34_pI3 light chain: A
N123-VRC34_pI3 heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

N123-VRC34_pI3 light chain

N123-VRC34_pI3 heavy chain