SMTL ID : 6uep.1 (1 other biounit)

Structure of A. thaliana TBP bound to a DNA site with a C-C mismatch

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 4 residues within 4Å: Chain A: T.50, V.51, D.131 Chain B: C.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.50, A:K.97, A:D.131 FMT.2: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.67 FMT.3: 3 residues within 4Å: Chain B: C.13 Chain C: G.2, C.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Afek, A. et al., DNA mismatches reveal conformational penalties in protein-DNA recognition. Nature (2020)

Release Date

2020-09-02

Peptides

TATA-box-binding protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

TATA-box-binding protein 1

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