SMTL ID : 6ufx.1

WD repeat-containing protein 5 complexed with N-[(3,5-dimethoxyphenyl)methyl]-4'-fluoro-5-{[(2E)-2-imino-3-methyl-2,3-dihydro-1H-imidazol-1-yl]methyl}-2'-methyl[1,1'-biphenyl]-3-carboxamide (compound 13)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

1 x Q6S: N-[(3,5-dimethoxyphenyl)methyl]-4'-fluoro-5-{[(2E)-2-imino-3-methyl-2,3-dihydro-1H-imidazol-1-yl]methyl}-2'-methyl[1,1'-biphenyl]-3-carboxamide(Non-covalent)

Q6S.1: 20 residues within 4Å: Chain A: V.17, S.18, A.34, G.58, I.59, S.60, D.61, D.76, F.102, C.103, F.118, P.142, V.143, S.144, Y.160, Y.229, C.230, F.232, I.274, L.290 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.34, A:F.118, A:I.274, A:I.274, A:L.290 Hydrogen bonds: A:C.230 Salt bridges: A:D.61 pi-Stacking: A:F.102, A:F.102, A:F.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tian, J. et al., Discovery and Structure-Based Optimization of Potent and Selective WD Repeat Domain 5 (WDR5) Inhibitors Containing a Dihydroisoquinolinone Bicyclic Core. J.Med.Chem. (2020)

Release Date

2020-01-01

Peptides

WD repeat-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

WD repeat-containing protein 5