SMTL ID : 6uge.1

Katanin hexamer in the ring conformation in complex with substrate

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-1-mer

Ligands

5 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 15 residues within 4Å: Chain B: D.212, I.213, I.214, P.253, G.254, T.255, G.256, K.257, T.258, L.259, G.416, A.417 Chain C: R.369, R.370 Ligands: MG.2 15 PLIP interactions: 4 interactions with chain C, 11 interactions with chain B Salt bridges: C:R.369, C:R.369, C:R.369, C:R.370, B:K.257 Hydrogen bonds: B:I.214, B:I.214, B:G.254, B:T.255, B:G.256, B:K.257, B:T.258, B:T.258, B:L.259, B:Q.311 ATP.3: 18 residues within 4Å: Chain C: D.212, I.213, I.214, P.253, G.254, T.255, G.256, K.257, T.258, L.259, Q.311, L.388, G.416, A.417, V.420 Chain D: R.369, R.370 Ligands: MG.4 15 PLIP interactions: 11 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:I.214, C:I.214, C:G.256, C:K.257, C:T.258, C:T.258, C:L.259, C:Q.311, C:N.358, D:R.369 Salt bridges: C:K.257, C:K.257, D:R.369, D:R.369, D:R.370 ATP.5: 15 residues within 4Å: Chain D: I.214, P.253, G.254, T.255, G.256, K.257, T.258, L.259, Q.311, L.388, K.391, A.417 Chain E: R.369, R.370 Ligands: MG.6 16 PLIP interactions: 12 interactions with chain D, 4 interactions with chain E Hydrogen bonds: D:I.214, D:I.214, D:G.254, D:T.255, D:G.256, D:K.257, D:T.258, D:T.258, D:L.259, D:Q.311, D:K.391 Salt bridges: D:K.257, E:R.369, E:R.369, E:R.369, E:R.370 ATP.7: 16 residues within 4Å: Chain E: D.212, I.213, I.214, P.253, G.254, T.255, G.256, K.257, T.258, L.259, N.358, L.388, A.417 Chain F: R.369, R.370 Ligands: MG.8 15 PLIP interactions: 4 interactions with chain F, 11 interactions with chain E Salt bridges: F:R.369, F:R.369, F:R.369, F:R.370, E:K.257, E:K.257 Hydrogen bonds: E:I.214, E:I.214, E:K.257, E:T.258, E:T.258, E:L.259, E:Q.311, E:N.358, E:N.358 ATP.9: 12 residues within 4Å: Chain F: D.212, I.213, I.214, P.253, G.254, T.255, G.256, K.257, T.258, L.259, G.416, A.417 11 PLIP interactions: 11 interactions with chain F Hydrogen bonds: F:I.214, F:I.214, F:G.254, F:T.255, F:G.256, F:K.257, F:T.258, F:T.258, F:T.258, F:L.259 Salt bridges: F:K.257

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain B: T.258 Ligands: ATP.1 No protein-ligand interaction detected (PLIP) MG.4: 2 residues within 4Å: Chain C: T.258 Ligands: ATP.3 No protein-ligand interaction detected (PLIP) MG.6: 2 residues within 4Å: Chain D: T.258 Ligands: ATP.5 No protein-ligand interaction detected (PLIP) MG.8: 2 residues within 4Å: Chain E: T.258 Ligands: ATP.7 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:T.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zehr, E.A. et al., Katanin Grips the beta-Tubulin Tail through an Electropositive Double Spiral to Sever Microtubules. Dev.Cell (2020)

Release Date

2019-10-09

Peptides

Meiotic spindle formation protein mei-1: ABCDEF
Polyglutamate peptide: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

Meiotic spindle formation protein mei-1

Polyglutamate peptide

Related Entries With Identical Sequence