SMTL ID : 6ugx.1

Crystal structure of the Fc fragment of PF06438179/GP1111 an infliximab biosimilar in a primative orthorhombic crystal form, Lot A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- MAN- NAG- MAN- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1: 12 residues within 4Å: Chain A: F.49, F.51, K.54, T.68, V.70, V.72, D.73, Q.103, Y.104, N.105, T.107, R.109 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.104 Water bridges: A:Y.104, A:R.109, A:R.109, A:T.68 Hydrogen bonds: A:K.54, A:K.54

1 x NAG- NAG- BMA- MAN- NAG- MAN- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-FUC.2: 11 residues within 4Å: Chain B: F.49, F.51, K.54, T.68, V.72, D.73, Q.103, Y.104, N.105, T.107, R.109 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.104 Hydrogen bonds: B:Q.103, B:K.54, B:K.54 Water bridges: B:T.68

1 x K: POTASSIUM ION(Non-covalent)

K.3: 2 residues within 4Å: Chain B: D.57, T.64 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.57, B:T.64, H2O.10

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 1 residues within 4Å: Chain B: M.60 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lerch, T.F. et al., Crystal Structures of PF-06438179/GP1111, an Infliximab Biosimilar. BioDrugs (2020)

Release Date

2019-11-13

Peptides

PF-06438179/GP1111 Fc: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PF-06438179/GP1111 Fc

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