- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x QG4: {N-(2-{bis[(pyridin-2-yl-kappaN)methyl]amino-kappaN}ethyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide}(triaza-1,2-dien-2-ium-1-ide-kappaN~1~)iron(4+)(Non-covalent)
QG4.1: 26 residues within 4Å:- Chain A: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, E.112, A.121, S.122, T.123, L.124, D.128
- Chain C: W.120, A.121, L.124
- Ligands: ACT.2, QG4.9
19 PLIP interactions:17 interactions with chain A, 2 interactions with chain C,- Hydrophobic interactions: A:W.79, A:W.79, A:W.79, A:L.110, A:E.112, A:L.124, C:A.121, C:L.124
- Hydrogen bonds: A:N.23, A:S.27, A:Y.43, A:S.45, A:N.49, A:S.88, A:S.88, A:D.128
- Water bridges: A:N.49
- Salt bridges: A:E.112
- Metal complexes: A:E.112
QG4.5: 26 residues within 4Å:- Chain B: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, E.112, A.121, S.122, T.123, L.124, D.128
- Chain D: W.120, A.121, L.124
- Ligands: ACT.6, QG4.13
19 PLIP interactions:17 interactions with chain B, 2 interactions with chain D,- Hydrophobic interactions: B:W.79, B:W.79, B:W.79, B:L.110, B:E.112, B:L.124, D:A.121, D:L.124
- Hydrogen bonds: B:N.23, B:S.27, B:S.45, B:N.49, B:S.88, B:S.88, B:D.128
- Water bridges: B:N.49, B:N.49
- Salt bridges: B:E.112
- Metal complexes: B:E.112
QG4.9: 26 residues within 4Å:- Chain A: W.120, A.121, L.124
- Chain C: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, E.112, A.121, S.122, T.123, L.124, D.128
- Ligands: QG4.1, ACT.10
19 PLIP interactions:17 interactions with chain C, 2 interactions with chain A,- Hydrophobic interactions: C:W.79, C:W.79, C:W.79, C:L.110, C:E.112, C:L.124, A:A.121, A:L.124
- Hydrogen bonds: C:N.23, C:S.27, C:Y.43, C:S.45, C:N.49, C:S.88, C:S.88, C:D.128
- Water bridges: C:N.49
- Salt bridges: C:E.112
- Metal complexes: C:E.112
QG4.13: 26 residues within 4Å:- Chain B: W.120, A.121, L.124
- Chain D: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, W.79, A.86, S.88, T.90, W.92, W.108, L.110, E.112, A.121, S.122, T.123, L.124, D.128
- Ligands: QG4.5, ACT.14
19 PLIP interactions:17 interactions with chain D, 2 interactions with chain B,- Hydrophobic interactions: D:W.79, D:W.79, D:W.79, D:L.110, D:E.112, D:L.124, B:A.121, B:L.124
- Hydrogen bonds: D:N.23, D:S.27, D:S.45, D:N.49, D:S.88, D:S.88, D:D.128
- Water bridges: D:N.49, D:N.49
- Salt bridges: D:E.112
- Metal complexes: D:E.112
- 12 x ACT: ACETATE ION(Non-functional Binders)
ACT.2: 2 residues within 4Å:- Chain A: E.112
- Ligands: QG4.1
No protein-ligand interaction detected (PLIP)ACT.3: 2 residues within 4Å:- Chain A: N.82, Y.83
No protein-ligand interaction detected (PLIP)ACT.4: 1 residues within 4Å:- Chain A: R.84
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.84
ACT.6: 2 residues within 4Å:- Chain B: E.112
- Ligands: QG4.5
No protein-ligand interaction detected (PLIP)ACT.7: 2 residues within 4Å:- Chain B: N.82, Y.83
No protein-ligand interaction detected (PLIP)ACT.8: 1 residues within 4Å:- Chain B: R.84
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.84
ACT.10: 2 residues within 4Å:- Chain C: E.112
- Ligands: QG4.9
No protein-ligand interaction detected (PLIP)ACT.11: 2 residues within 4Å:- Chain C: N.82, Y.83
No protein-ligand interaction detected (PLIP)ACT.12: 1 residues within 4Å:- Chain C: R.84
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.84
ACT.14: 2 residues within 4Å:- Chain D: E.112
- Ligands: QG4.13
No protein-ligand interaction detected (PLIP)ACT.15: 2 residues within 4Å:- Chain D: N.82, Y.83
No protein-ligand interaction detected (PLIP)ACT.16: 1 residues within 4Å:- Chain D: R.84
1 PLIP interactions:1 interactions with chain D- Salt bridges: D:R.84
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Miller, K.R. et al., Artificial Iron Proteins: Modeling the Active Sites in Non-Heme Dioxygenases. Inorg.Chem. (2020)
- Release Date
- 2020-05-06
- Peptides
- Streptavidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x QG4: {N-(2-{bis[(pyridin-2-yl-kappaN)methyl]amino-kappaN}ethyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide}(triaza-1,2-dien-2-ium-1-ide-kappaN~1~)iron(4+)(Non-covalent)
- 12 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Miller, K.R. et al., Artificial Iron Proteins: Modeling the Active Sites in Non-Heme Dioxygenases. Inorg.Chem. (2020)
- Release Date
- 2020-05-06
- Peptides
- Streptavidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A