SMTL ID : 6ujk.1

Crystal Structure of a Probable short-chain type dehydrogenase/reductase (Rv1144) from Mycobacterium tuberculosis with bound NAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 26 residues within 4Å: Chain A: G.20, S.23, G.24, L.25, D.44, L.45, R.46, A.63, D.64, V.65, C.90, A.91, G.92, I.117, T.149, A.150, S.151, Y.164, K.168, P.194, G.195, L.196, F.197, T.199, P.200, L.201 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:P.194, A:L.201 Hydrogen bonds: A:G.20, A:S.23, A:S.23, A:L.25, A:L.45, A:R.46, A:D.64, A:V.65, A:A.91, A:G.92, A:Y.164, A:K.168, A:F.197, A:F.197, A:T.199, A:L.201 Water bridges: A:G.26, A:R.46 NAD.6: 25 residues within 4Å: Chain B: G.20, S.23, G.24, L.25, D.44, L.45, A.63, D.64, V.65, C.90, A.91, G.92, I.117, T.149, A.150, S.151, Y.164, K.168, P.194, G.195, L.196, F.197, T.199, P.200, L.201 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:P.194, B:L.201 Hydrogen bonds: B:S.23, B:S.23, B:L.25, B:L.45, B:R.46, B:D.64, B:V.65, B:A.91, B:G.92, B:Y.164, B:K.168, B:F.197, B:F.197, B:L.201 Water bridges: B:G.26

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: R.112, D.116, V.120 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.112 EDO.3: 7 residues within 4Å: Chain A: Q.158, Q.216, I.253, R.254, M.255, A.256, R.258 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.158, A:A.256 Water bridges: A:Q.158, A:Q.216 EDO.4: 1 residues within 4Å: Chain A: D.13 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.13 EDO.7: 5 residues within 4Å: Chain B: I.97, D.103, G.104, V.105, P.107 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.105 EDO.8: 7 residues within 4Å: Chain B: Q.158, Q.216, I.253, R.254, M.255, A.256, R.258 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.158, B:A.256 Water bridges: B:R.254, B:R.254, B:R.254 EDO.9: 3 residues within 4Å: Chain B: R.112, D.116, V.120 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.112, B:D.116 EDO.10: 5 residues within 4Å: Chain B: R.85, E.142, R.143, G.144, I.237 No protein-ligand interaction detected (PLIP)

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.5: 7 residues within 4Å: Chain A: E.245, V.246, R.248 Chain B: F.155, E.245, V.246, R.248 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Water bridges: A:E.245, A:V.246 Hydrogen bonds: B:V.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dranow, D.M. et al., Crystal Structure of a Probable short-chain type dehydrogenase/reductase (Rv1144) from Mycobacterium tuberculosis with bound NAD. to be published

Release Date

2019-10-16

Peptides

Uncharacterized oxidoreductase Rv1144: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized oxidoreductase Rv1144